2017-03-17T12:36:57.822+0100 I CONTROL [initandlisten] MongoDB starting : pid=16501 port=27067 dbpath=/data/repairtest/secondary_mmapv1 64-bit host=somegenerichost 2017-03-17T12:36:57.822+0100 I CONTROL [initandlisten] db version v3.2.12 2017-03-17T12:36:57.822+0100 I CONTROL [initandlisten] git version: ef3e1bc78e997f0d9f22f45aeb1d8e3b6ac14a14 2017-03-17T12:36:57.822+0100 I CONTROL [initandlisten] OpenSSL version: OpenSSL 1.0.1e 11 Feb 2013 2017-03-17T12:36:57.822+0100 I CONTROL [initandlisten] allocator: tcmalloc 2017-03-17T12:36:57.822+0100 I CONTROL [initandlisten] modules: none 2017-03-17T12:36:57.822+0100 I CONTROL [initandlisten] build environment: 2017-03-17T12:36:57.822+0100 I CONTROL [initandlisten] distmod: debian71 2017-03-17T12:36:57.822+0100 I CONTROL [initandlisten] distarch: x86_64 2017-03-17T12:36:57.822+0100 I CONTROL [initandlisten] target_arch: x86_64 2017-03-17T12:36:57.822+0100 I CONTROL [initandlisten] options: { net: { port: 27067 }, repair: true, replication: { oplogSizeMB: 100, replSet: "repairtest" }, security: { authorization: "enabled", keyFile: "/data/repairtest/keyfile" }, storage: { dbPath: "/data/repairtest/secondary_mmapv1", engine: "mmapv1", mmapv1: { preallocDataFiles: false, smallFiles: true } } } 2017-03-17T12:36:57.892+0100 I CONTROL [initandlisten] ** WARNING: You are running this process as the root user, which is not recommended. 2017-03-17T12:36:57.892+0100 I CONTROL [initandlisten] 2017-03-17T12:36:57.893+0100 I STORAGE [initandlisten] repairDatabase local 2017-03-17T12:36:57.896+0100 I INDEX [initandlisten] allocating new ns file /data/repairtest/secondary_mmapv1/_tmp_repairDatabase_0/local.ns, filling with zeroes... 2017-03-17T12:36:57.926+0100 I STORAGE [FileAllocator] allocating new datafile /data/repairtest/secondary_mmapv1/_tmp_repairDatabase_0/local.0, filling with zeroes... 2017-03-17T12:36:57.926+0100 I STORAGE [FileAllocator] creating directory /data/repairtest/secondary_mmapv1/_tmp_repairDatabase_0/_tmp 2017-03-17T12:36:57.927+0100 I STORAGE [FileAllocator] done allocating datafile /data/repairtest/secondary_mmapv1/_tmp_repairDatabase_0/local.0, size: 16MB, took 0 secs 2017-03-17T12:36:57.929+0100 I INDEX [initandlisten] build index on: local.me properties: { v: 1, key: { _id: 1 }, name: "_id_", ns: "local.me" } 2017-03-17T12:36:57.929+0100 I INDEX [initandlisten] building index using bulk method 2017-03-17T12:36:57.930+0100 I STORAGE [FileAllocator] allocating new datafile /data/repairtest/secondary_mmapv1/_tmp_repairDatabase_0/local.1, filling with zeroes... 2017-03-17T12:36:57.930+0100 I STORAGE [FileAllocator] done allocating datafile /data/repairtest/secondary_mmapv1/_tmp_repairDatabase_0/local.1, size: 128MB, took 0 secs 2017-03-17T12:36:57.931+0100 I INDEX [initandlisten] build index on: local.replset.minvalid properties: { v: 1, key: { _id: 1 }, name: "_id_", ns: "local.replset.minvalid" } 2017-03-17T12:36:57.931+0100 I INDEX [initandlisten] building index using bulk method 2017-03-17T12:36:57.931+0100 I INDEX [initandlisten] build index on: local.startup_log properties: { v: 1, key: { _id: 1 }, name: "_id_", ns: "local.startup_log" } 2017-03-17T12:36:57.931+0100 I INDEX [initandlisten] building index using bulk method 2017-03-17T12:36:57.932+0100 I INDEX [initandlisten] build index on: local.system.replset properties: { v: 1, key: { _id: 1 }, name: "_id_", ns: "local.system.replset" } 2017-03-17T12:36:57.932+0100 I INDEX [initandlisten] building index using bulk method 2017-03-17T12:36:57.943+0100 I STORAGE [initandlisten] repairDatabase admin 2017-03-17T12:36:57.945+0100 I INDEX [initandlisten] allocating new ns file /data/repairtest/secondary_mmapv1/_tmp_repairDatabase_0/admin.ns, filling with zeroes... 2017-03-17T12:36:57.974+0100 I STORAGE [FileAllocator] allocating new datafile /data/repairtest/secondary_mmapv1/_tmp_repairDatabase_0/admin.0, filling with zeroes... 2017-03-17T12:36:57.974+0100 I STORAGE [FileAllocator] creating directory /data/repairtest/secondary_mmapv1/_tmp_repairDatabase_0/_tmp 2017-03-17T12:36:57.975+0100 I STORAGE [FileAllocator] done allocating datafile /data/repairtest/secondary_mmapv1/_tmp_repairDatabase_0/admin.0, size: 16MB, took 0 secs 2017-03-17T12:36:57.977+0100 F REPL [initandlisten] logOp() but can't accept write to collection admin.$cmd 2017-03-17T12:36:57.977+0100 I - [initandlisten] Fatal Assertion 17405 2017-03-17T12:36:57.977+0100 I - [initandlisten] ***aborting after fassert() failure 2017-03-17T12:36:57.996+0100 F - [initandlisten] Got signal: 6 (Aborted). 0x1315b12 0x1314a39 0x1315242 0x7fb3cf3070a0 0x7fb3cef9d125 0x7fb3cefa03a0 0x12981d2 0xe81dcc 0xe837b3 0xe83972 0xcd341b 0xa9cfd7 0x10491ac 0xe23cd7 0x9462e3 0x9481b0 0x949a3d 0x7fb3cef89ead 0x942549 ----- BEGIN BACKTRACE ----- {"backtrace":[{"b":"400000","o":"F15B12","s":"_ZN5mongo15printStackTraceERSo"},{"b":"400000","o":"F14A39"},{"b":"400000","o":"F15242"},{"b":"7FB3CF2F8000","o":"F0A0"},{"b":"7FB3CEF6B000","o":"32125","s":"gsignal"},{"b":"7FB3CEF6B000","o":"353A0","s":"abort"},{"b":"400000","o":"E981D2","s":"_ZN5mongo13fassertFailedEi"},{"b":"400000","o":"A81DCC"},{"b":"400000","o":"A837B3","s":"_ZN5mongo4repl6_logOpEPNS_16OperationContextEPKcS4_RKNS_7BSONObjEPS5_bRKSsNS0_22ReplicationCoordinator4ModeEb"},{"b":"400000","o":"A83972","s":"_ZN5mongo4repl5logOpEPNS_16OperationContextEPKcS4_RKNS_7BSONObjEPS5_b"},{"b":"400000","o":"8D341B","s":"_ZN5mongo10OpObserver18onCreateCollectionEPNS_16OperationContextERKNS_15NamespaceStringERKNS_17CollectionOptionsE"},{"b":"400000","o":"69CFD7","s":"_ZN5mongo8Database16createCollectionEPNS_16OperationContextENS_10StringDataERKNS_17CollectionOptionsEb"},{"b":"400000","o":"C491AC","s":"_ZN5mongo12MMAPV1Engine14repairDatabaseEPNS_16OperationContextERKSsbb"},{"b":"400000","o":"A23CD7","s":"_ZN5mongo14repairDatabaseEPNS_16OperationContextEPNS_13StorageEngineERKSsbb"},{"b":"400000","o":"5462E3"},{"b":"400000","o":"5481B0","s":"_ZN5mongo13initAndListenEi"},{"b":"400000","o":"549A3D","s":"main"},{"b":"7FB3CEF6B000","o":"1EEAD","s":"__libc_start_main"},{"b":"400000","o":"542549"}],"processInfo":{ "mongodbVersion" : "3.2.12", "gitVersion" : "ef3e1bc78e997f0d9f22f45aeb1d8e3b6ac14a14", "compiledModules" : [], "uname" : { "sysname" : "Linux", "release" : "4.4.2-lscs-2", "version" : "#1 SMP Fri Feb 19 11:08:38 CET 2016", "machine" : "x86_64" }, "somap" : [ { "elfType" : 2, "b" : "400000", "buildId" : "A9B18E620F02487C1F2B5F355EB119AC75B94CD7" }, { "b" : "7FFF62A70000", "elfType" : 3, "buildId" : "08F635781C80161ACACC1542E77EF77D0A04D08D" }, { "b" : "7FB3D01B1000", "path" : "/usr/lib/x86_64-linux-gnu/libssl.so.1.0.0", "elfType" : 3, "buildId" : "16DA62C831D8080E3BCB9A1E7738D399EA3A89C0" }, { "b" : "7FB3CFDB8000", "path" : "/usr/lib/x86_64-linux-gnu/libcrypto.so.1.0.0", "elfType" : 3, "buildId" : "079D784F9F4A88B6D87FC3E6B0B07BFBE209540E" }, { "b" : "7FB3CFBB0000", "path" : "/lib/x86_64-linux-gnu/librt.so.1", "elfType" : 3, "buildId" : "77CB0070BB75470C626B899800FFCF8C8184E32A" }, { "b" : "7FB3CF9AC000", "path" : "/lib/x86_64-linux-gnu/libdl.so.2", "elfType" : 3, "buildId" : "32CCD52B7228B03E969C21587F14C2322D4A9544" }, { "b" : "7FB3CF72A000", "path" : "/lib/x86_64-linux-gnu/libm.so.6", "elfType" : 3, "buildId" : "98FAFAB6E776EA40FBFFFBCB22859A8D54028EC0" }, { "b" : "7FB3CF514000", "path" : "/lib/x86_64-linux-gnu/libgcc_s.so.1", "elfType" : 3, "buildId" : "F980B1188708F8D8B5C35D185444AF4CB939AA1E" }, { "b" : "7FB3CF2F8000", "path" : "/lib/x86_64-linux-gnu/libpthread.so.0", "elfType" : 3, "buildId" : "F260CD217A3C0D89FD80BCC80D486C1C2AD32DCA" }, { "b" : "7FB3CEF6B000", "path" : "/lib/x86_64-linux-gnu/libc.so.6", "elfType" : 3, "buildId" : "BD7458ADC60E906DBAABB72A7DA5015D5BC8269F" }, { "b" : "7FB3D0410000", "path" : "/lib64/ld-linux-x86-64.so.2", "elfType" : 3, "buildId" : "B66F918D37C1E4122FC91C74210F2112A6A5148E" }, { "b" : "7FB3CED54000", "path" : "/lib/x86_64-linux-gnu/libz.so.1", "elfType" : 3, "buildId" : "1EFEB71FD4999C2307570D673A724EA4E1D85267" } ] }} mongod(_ZN5mongo15printStackTraceERSo+0x32) [0x1315b12] mongod(+0xF14A39) [0x1314a39] mongod(+0xF15242) [0x1315242] libpthread.so.0(+0xF0A0) [0x7fb3cf3070a0] libc.so.6(gsignal+0x35) [0x7fb3cef9d125] libc.so.6(abort+0x180) [0x7fb3cefa03a0] mongod(_ZN5mongo13fassertFailedEi+0x82) [0x12981d2] mongod(+0xA81DCC) [0xe81dcc] mongod(_ZN5mongo4repl6_logOpEPNS_16OperationContextEPKcS4_RKNS_7BSONObjEPS5_bRKSsNS0_22ReplicationCoordinator4ModeEb+0x213) [0xe837b3] mongod(_ZN5mongo4repl5logOpEPNS_16OperationContextEPKcS4_RKNS_7BSONObjEPS5_b+0x62) [0xe83972] mongod(_ZN5mongo10OpObserver18onCreateCollectionEPNS_16OperationContextERKNS_15NamespaceStringERKNS_17CollectionOptionsE+0x31B) [0xcd341b] mongod(_ZN5mongo8Database16createCollectionEPNS_16OperationContextENS_10StringDataERKNS_17CollectionOptionsEb+0x2F7) [0xa9cfd7] mongod(_ZN5mongo12MMAPV1Engine14repairDatabaseEPNS_16OperationContextERKSsbb+0xF6C) [0x10491ac] mongod(_ZN5mongo14repairDatabaseEPNS_16OperationContextEPNS_13StorageEngineERKSsbb+0xF77) [0xe23cd7] mongod(+0x5462E3) [0x9462e3] mongod(_ZN5mongo13initAndListenEi+0x10) [0x9481b0] mongod(main+0x15D) [0x949a3d] libc.so.6(__libc_start_main+0xFD) [0x7fb3cef89ead] mongod(+0x542549) [0x942549] ----- END BACKTRACE ----- Aborted