[arcus@ip-172-22-17-11 bkn]$ mongoimport -d arcusairdb -u incusdba -p incus@123 --host 172.22.17.11 --file patientimage.json -c patientimages --drop 2018-09-22T04:06:50.513+0000 connected to: 172.22.17.11 2018-09-22T04:06:50.514+0000 dropping: arcusairdb.patientimages 2018-09-22T04:06:53.500+0000 [##......................] arcusairdb.patientimages 256MB/2.61GB (9.6%) 2018-09-22T04:06:56.500+0000 [####....................] arcusairdb.patientimages 512MB/2.61GB (19.2%) 2018-09-22T04:06:59.500+0000 [#########...............] arcusairdb.patientimages 1024MB/2.61GB (38.4%) 2018-09-22T04:07:02.500+0000 [#########...............] arcusairdb.patientimages 1024MB/2.61GB (38.4%) 2018-09-22T04:07:05.500+0000 [#########...............] arcusairdb.patientimages 1024MB/2.61GB (38.4%) 2018-09-22T04:07:08.500+0000 [##################......] arcusairdb.patientimages 2.00GB/2.61GB (76.7%) 2018-09-22T04:07:11.500+0000 [##################......] arcusairdb.patientimages 2.00GB/2.61GB (76.7%) fatal error: runtime: out of memory runtime stack: runtime.throw(0x85b391, 0x16) /opt/go/src/runtime/panic.go:566 +0x95 runtime.sysMap(0xc520200000, 0x100000000, 0xc3c400, 0xc5a798) /opt/go/src/runtime/mem_linux.go:219 +0x1d0 runtime.(*mheap).sysAlloc(0xc414c0, 0x100000000, 0x417400) /opt/go/src/runtime/malloc.go:407 +0x37a runtime.(*mheap).grow(0xc414c0, 0x80000, 0x0) /opt/go/src/runtime/mheap.go:726 +0x62 runtime.(*mheap).allocSpanLocked(0xc414c0, 0x80000, 0xc4200ca910) /opt/go/src/runtime/mheap.go:630 +0x4f2 runtime.(*mheap).alloc_m(0xc414c0, 0x80000, 0x100000000, 0x4302a6) /opt/go/src/runtime/mheap.go:515 +0xe0 runtime.(*mheap).alloc.func1() /opt/go/src/runtime/mheap.go:579 +0x4b runtime.systemstack(0x7f3415baecd8) /opt/go/src/runtime/asm_amd64.s:314 +0xab runtime.(*mheap).alloc(0xc414c0, 0x80000, 0x10100000000, 0xc42001a000) /opt/go/src/runtime/mheap.go:580 +0x73 runtime.largeAlloc(0xfffffe00, 0x7f3415baed01, 0x45a1ca) /opt/go/src/runtime/malloc.go:774 +0x93 runtime.mallocgc.func1() /opt/go/src/runtime/malloc.go:669 +0x3e runtime.systemstack(0xc42001a000) /opt/go/src/runtime/asm_amd64.s:298 +0x79 runtime.mstart() /opt/go/src/runtime/proc.go:1079 goroutine 25 [running]: runtime.systemstack_switch() /opt/go/src/runtime/asm_amd64.s:252 fp=0xc420035c80 sp=0xc420035c78 runtime.mallocgc(0xfffffe00, 0x7c2960, 0x1, 0x4) /opt/go/src/runtime/malloc.go:670 +0x903 fp=0xc420035d20 sp=0xc420035c80 runtime.makeslice(0x7c2960, 0x7ffffe00, 0xfffffe00, 0x40000000, 0x40000000, 0x0) /opt/go/src/runtime/slice.go:57 +0x7b fp=0xc420035d78 sp=0xc420035d20 github.com/mongodb/mongo-tools/common/json.(*Decoder).readValue(0xc42012f520, 0x0, 0x0, 0x0) /data/mci/e94377d4e5982a1a4dfc3dd4e985bded/src/src/mongo/gotools/.gopath/src/github.com/mongodb/mongo-tools/common/json/stream.go:164 +0x26e fp=0xc420035e18 sp=0xc420035d78 github.com/mongodb/mongo-tools/common/json.(*Decoder).ScanObject(0xc42012f520, 0x0, 0x0, 0x0, 0x0, 0x0) /data/mci/e94377d4e5982a1a4dfc3dd4e985bded/src/src/mongo/gotools/.gopath/src/github.com/mongodb/mongo-tools/common/json/stream.go:72 +0x46 fp=0xc420035e80 sp=0xc420035e18 github.com/mongodb/mongo-tools/mongoimport.(*JSONInputReader).StreamDocument.func1(0xc4200f22a0, 0xc4200f2900, 0xc4200f2960) /data/mci/e94377d4e5982a1a4dfc3dd4e985bded/src/src/mongo/gotools/.gopath/src/github.com/mongodb/mongo-tools/mongoimport/json.go:124 +0x52 fp=0xc420035f98 sp=0xc420 goroutine 25 [running]: runtime.systemstack_switch() /opt/go/src/runtime/asm_amd64.s:252 fp=0xc420035c80 sp=0xc420035c78 runtime.mallocgc(0xfffffe00, 0x7c2960, 0x1, 0x4) /opt/go/src/runtime/malloc.go:670 +0x903 fp=0xc420035d20 sp=0xc420035c80 runtime.makeslice(0x7c2960, 0x7ffffe00, 0xfffffe00, 0x40000000, 0x40000000, 0x0) /opt/go/src/runtime/slice.go:57 +0x7b fp=0xc420035d78 sp=0xc420035d20 github.com/mongodb/mongo-tools/common/json.(*Decoder).readValue(0xc42012f520, 0x0, 0x0, 0x0) /data/mci/e94377d4e5982a1a4dfc3dd4e985bded/src/src/mongo/gotools/.gopath/src/github.com/mongodb/mongo-tools/common/json/stream.go:164 +0x26e fp=0xc420035e18 sp=0xc420035d78 github.com/mongodb/mongo-tools/common/json.(*Decoder).ScanObject(0xc42012f520, 0x0, 0x0, 0x0, 0x0, 0x0) /data/mci/e94377d4e5982a1a4dfc3dd4e985bded/src/src/mongo/gotools/.gopath/src/github.com/mongodb/mongo-tools/common/json/stream.go:72 +0x46 fp=0xc420035e80 sp=0xc420035e18 github.com/mongodb/mongo-tools/mongoimport.(*JSONInputReader).StreamDocument.func1(0xc4200f22a0, 0xc4200f2900, 0xc4200f2960) /data/mci/e94377d4e5982a1a4dfc3dd4e985bded/src/src/mongo/gotools/.gopath/src/github.com/mongodb/mongo-tools/mongoimport/json.go:124 +0x52 fp=0xc420035f98 sp=0xc420035e80 runtime.goexit() /opt/go/src/runtime/asm_amd64.s:2086 +0x1 fp=0xc420035fa0 sp=0xc420035f98 created by github.com/mongodb/mongo-tools/mongoimport.(*JSONInputReader).StreamDocument /data/mci/e94377d4e5982a1a4dfc3dd4e985bded/src/src/mongo/gotools/.gopath/src/github.com/mongodb/mongo-tools/mongoimport/json.go:141 +0x9d goroutine 1 [chan receive]: github.com/mongodb/mongo-tools/mongoimport.channelQuorumError(0xc4200f2780, 0x2, 0xc4200f2780, 0xc4200f4700) /data/mci/e94377d4e5982a1a4dfc3dd4e985bded/src/src/mongo/gotools/.gopath/src/github.com/mongodb/mongo-tools/mongoimport/common.go:142 +0x6d github.com/mongodb/mongo-tools/mongoimport.(*MongoImport).importDocuments(0xc4200f4700, 0xc27340, 0xc4200f22a0, 0x0, 0x0, 0x0) /data/mci/e94377d4e5982a1a4dfc3dd4e985bded/src/src/mongo/gotools/.gopath/src/github.com/mongodb/mongo-tools/mongoimport/mongoimport.go:400 +0x8b5 github.com/mongodb/mongo-tools/mongoimport.(*MongoImport).ImportDocuments(0xc4200f4700, 0x0, 0x0, 0x0) /data/mci/e94377d4e5982a1a4dfc3dd4e985bded/src/src/mongo/gotools/.gopath/src/github.com/mongodb/mongo-tools/mongoimport/mongoimport.go:335 +0x464 main.main() /data/mci/e94377d4e5982a1a4dfc3dd4e985bded/src/src/mongo/gotools/mongoimport/main/mongoimport.go:78 +0x563 goroutine 17 [syscall, locked to thread]: runtime.goexit() /opt/go/src/runtime/asm_amd64.s:2086 +0x1 goroutine 5 [syscall]: os/signal.signal_recv(0x0) /opt/go/src/runtime/sigqueue.go:116 +0x157 os/signal.loop() /opt/go/src/os/signal/signal_unix.go:22 +0x22 created by os/signal.init.1 /opt/go/src/os/signal/signal_unix.go:28 +0x41 goroutine 9 [select, locked to thread]: runtime.gopark(0x88cad0, 0x0, 0x854cfb, 0x6, 0x18, 0x2) /opt/go/src/runtime/proc.go:259 +0x13a runtime.selectgoImpl(0xc420024730, 0x0, 0x18) /opt/go/src/runtime/select.go:423 +0x11d9 runtime.selectgo(0xc420024730) /opt/go/src/runtime/select.go:238 +0x1c runtime.ensureSigM.func1() /opt/go/src/runtime/signal1_unix.go:304 +0x2f3 runtime.goexit() /opt/go/src/runtime/asm_amd64.s:2086 +0x1 goroutine 19 [select]: github.com/mongodb/mongo-tools/common/signals.handleSignals(0x0, 0xc4200f21e0) /data/mci/e94377d4e5982a1a4dfc3dd4e985bded/src/src/mongo/gotools/.gopath/src/github.com/mongodb/mongo-tools/common/signals/signals.go:54 +0x44c created by github.com/mongodb/mongo-tools/common/signals.HandleWithInterrupt /data/mci/e94377d4e5982a1a4dfc3dd4e985bded/src/src/mongo/gotools/.gopath/src/github.com/mongodb/mongo-tools/common/signals/signals.go:31 +0x67 goroutine 20 [select]: github.com/mongodb/mongo-tools/common/progress.(*Bar).start(0xc4200f2300) /data/mci/e94377d4e5982a1a4dfc3dd4e985bded/src/src/mongo/gotools/.gopath/src/github.com/mongodb/mongo-tools/common/progress/progress_bar.go:152 +0x155 created by github.com/mongodb/mongo-tools/common/progress.(*Bar).Start /data/mci/e94377d4e5982a1a4dfc3dd4e985bded/src/src/mongo/gotools/.gopath/src/github.com/mongodb/mongo-tools/common/progress/progress_bar.go:69 +0xc8 goroutine 21 [select]: gopkg.in/mgo%2ev2.(*mongoCluster).syncServersLoop(0xc4200d6300) /data/mci/e94377d4e5982a1a4dfc3dd4e985bded/src/src/mongo/gotools/vendor/src/gopkg.in/mgo.v2/cluster.go:394 +0x3b3 created by gopkg.in/mgo%2ev2.newCluster /data/mci/e94377d4e5982a1a4dfc3dd4e985bded/src/src/mongo/gotools/vendor/src/gopkg.in/mgo.v2/cluster.go:78 +0x194 goroutine 22 [chan receive]: github.com/mongodb/mongo-tools/mongoimport.channelQuorumError(0xc4200f2960, 0x2, 0xc4200f2960, 0xc4200f2900) /data/mci/e94377d4e5982a1a4dfc3dd4e985bded/src/src/mongo/gotools/.gopath/src/github.com/mongodb/mongo-tools/mongoimport/common.go:142 +0x6d github.com/mongodb/mongo-tools/mongoimport.(*JSONInputReader).StreamDocument(0xc4200f22a0, 0x0, 0xc4200f2720, 0x0, 0x0) /data/mci/e94377d4e5982a1a4dfc3dd4e985bded/src/src/mongo/gotools/.gopath/src/github.com/mongodb/mongo-tools/mongoimport/json.go:148 +0xfd github.com/mongodb/mongo-tools/mongoimport.(*MongoImport).importDocuments.func1(0xc4200f2780, 0xc27340, 0xc4200f22a0, 0x7ffe6e393700, 0xc4200f2720) /data/mci/e94377d4e5982a1a4dfc3dd4e985bded/src/src/mongo/gotools/.gopath/src/github.com/mongodb/mongo-tools/mongoimport/mongoimport.go:392 +0x44 created by github.com/mongodb/mongo-tools/mongoimport.(*MongoImport).importDocuments /data/mci/e94377d4e5982a1a4dfc3dd4e985bded/src/src/mongo/gotools/.gopath/src/github.com/mongodb/mongo-tools/mongoimport/mongoimport.go:393 +0x865 goroutine 12 [sleep]: time.Sleep(0x37e11d600) /opt/go/src/runtime/time.go:59 +0xe1 gopkg.in/mgo%2ev2.(*mongoServer).pinger(0xc42000c460, 0xc4200c0b01) /data/mci/e94377d4e5982a1a4dfc3dd4e985bded/src/src/mongo/gotools/vendor/src/gopkg.in/mgo.v2/server.go:301 +0x2ae created by gopkg.in/mgo%2ev2.newServer /data/mci/e94377d4e5982a1a4dfc3dd4e985bded/src/src/mongo/gotools/vendor/src/gopkg.in/mgo.v2/server.go:89 +0x15f goroutine 14 [IO wait]: net.runtime_pollWait(0x7f341921bf28, 0x72, 0x4) /opt/go/src/runtime/netpoll.go:160 +0x59 net.(*pollDesc).wait(0xc420052290, 0x72, 0xc420032d58, 0xc420012088) /opt/go/src/net/fd_poll_runtime.go:73 +0x38 net.(*pollDesc).waitRead(0xc420052290, 0xc24400, 0xc420012088) /opt/go/src/net/fd_poll_runtime.go:78 +0x34 net.(*netFD).Read(0xc420052230, 0xc4200e0b10, 0x24, 0x24, 0x0, 0xc24400, 0xc420012088) /opt/go/src/net/fd_unix.go:243 +0x1a1 net.(*conn).Read(0xc420026120, 0xc4200e0b10, 0x24, 0x24, 0x0, 0x0, 0x0) /opt/go/src/net/net.go:173 +0x70 gopkg.in/mgo%2ev2.fill(0xc29120, 0xc420026120, 0xc4200e0b10, 0x24, 0x24, 0x0, 0xd1) /data/mci/e94377d4e5982a1a4dfc3dd4e985bded/src/src/mongo/gotools/vendor/src/gopkg.in/mgo.v2/socket.go:536 +0x53 gopkg.in/mgo%2ev2.(*mongoSocket).readLoop(0xc42000c540) /data/mci/e94377d4e5982a1a4dfc3dd4e985bded/src/src/mongo/gotools/vendor/src/gopkg.in/mgo.v2/socket.go:552 +0x125 created by gopkg.in/mgo%2ev2.newSocket /data/mci/e94377d4e5982a1a4dfc3dd4e985bded/src/src/mongo/gotools/vendor/src/gopkg.in/mgo.v2/socket.go:195 +0x278 goroutine 23 [semacquire]: sync.runtime_Semacquire(0xc42015a0fc) /opt/go/src/runtime/sema.go:47 +0x30 sync.(*WaitGroup).Wait(0xc42015a0f0) /opt/go/src/sync/waitgroup.go:131 +0x97 github.com/mongodb/mongo-tools/mongoimport.(*MongoImport).ingestDocuments(0xc4200f4700, 0xc4200f2720, 0x0, 0x0) top - 04:09:48 up 16 days, 18:28, 7 users, load average: 0.03, 0.09, 0.07 Tasks: 112 total, 1 running, 111 sleeping, 0 stopped, 0 zombie %Cpu(s): 0.0 us, 0.0 sy, 0.0 ni,100.0 id, 0.0 wa, 0.0 hi, 0.0 si, 0.0 st KiB Mem : 7905380 total, 5015952 free, 244772 used, 2644656 buff/cache KiB Swap: 0 total, 0 free, 0 used. 7167040 avail Mem PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND 13050 root 20 0 1521728 107044 8496 S 0.3 1.4 0:04.47 mongod 1 root 20 0 46100 2900 532 S 0.0 0.0 0:15.60 systemd 2 root 20 0 0 0 0 S 0.0 0.0 0:00.24 kthreadd 3 root 20 0 0 0 0 S 0.0 0.0 0:00.79 ksoftirqd/0 5 root 0 -20 0 0 0 S 0.0 0.0 0:00.00 kworker/0:0H 7 root rt 0 0 0 0 S 0.0 0.0 0:00.91 migration/0 8 root 20 0 0 0 0 S 0.0 0.0 0:00.00 rcu_bh 9 root 20 0 0 0 0 S 0.0 0.0 1:05.92 rcu_sched 10 root 0 -20 0 0 0 S 0.0 0.0 0:00.00 lru-add-drain 11 root rt 0 0 0 0 S 0.0 0.0 0:03.87 watchdog/0 12 root rt 0 0 0 0 S 0.0 0.0 0:02.80 watchdog/1 13 root rt 0 0 0 0 S 0.0 0.0 0:01.03 migration/1