|
Trying to --repair this new db results in the following crash:
> ./mongod -dbpath ../../mongo-data/ --directoryperdb --slowms 0 --repair
Tue Jul 27 17:26:23 MongoDB starting : pid=12051 port=27017 dbpath=../../mongo-data/ 64-bit
-
- NOTE: This is a development version (1.5.6) of MongoDB.
- Not recommended for production.
Tue Jul 27 17:26:23 db version v1.5.6, pdfile version 4.5
Tue Jul 27 17:26:23 git version: 39cdcd202f6377e95f30685098ce14c579670d45
Tue Jul 27 17:26:23 sys info: Linux domU-12-31-39-06-79-A1 2.6.21.7-2.ec2.v1.2.fc8xen #1 SMP Fri Nov 20 17:48:28 EST 2009 x86_64 BOOST_LIB_VERSION=1_41
[initandlisten] Tue Jul 27 17:26:23 query local.system.namespaces reslen:36 nscanned:0
{ name: /^local.temp./ }
nreturned:0 34ms
[initandlisten] Tue Jul 27 17:26:23 ****
[initandlisten] Tue Jul 27 17:26:23 ****
[initandlisten] Tue Jul 27 17:26:23 need to upgrade database pubmed_web with pdfile version 4.5, new version: 4.5
[initandlisten] Tue Jul 27 17:26:23 starting upgrade
[initandlisten] Tue Jul 27 17:26:23 pubmed_web repairDatabase pubmed_web
[initandlisten] Tue Jul 27 17:26:23 query pubmed_web.system.namespaces reslen:155 nscanned:3 {} nreturned:3 25ms
Tue Jul 27 17:26:23 allocating new datafile ../../mongo-data/$tmp_repairDatabase_0/pubmed_web/pubmed_web.ns, filling with zeroes...
Tue Jul 27 17:26:23 done allocating datafile ../../mongo-data/$tmp_repairDatabase_0/pubmed_web/pubmed_web.ns, size: 16MB, took 0.017 secs
Tue Jul 27 17:26:23 allocating new datafile ../../mongo-data/$tmp_repairDatabase_0/pubmed_web/pubmed_web.0, filling with zeroes...
Tue Jul 27 17:26:23 done allocating datafile ../../mongo-data/$tmp_repairDatabase_0/pubmed_web/pubmed_web.0, size: 64MB, took 0 secs
Tue Jul 27 17:26:23 allocating new datafile ../../mongo-data/$tmp_repairDatabase_0/pubmed_web/pubmed_web.1, filling with zeroes...
Tue Jul 27 17:26:23 done allocating datafile ../../mongo-data/$tmp_repairDatabase_0/pubmed_web/pubmed_web.1, size: 128MB, took 0.001 secs
[initandlisten] Tue Jul 27 17:26:23 query pubmed_web.universes reslen:26301 nscanned:4 {} nreturned:4 18ms
[initandlisten] Tue Jul 27 17:26:23 building new index on
{ _id: 1 }
for pubmed_web.universes
[initandlisten] Tue Jul 27 17:26:23 Buildindex pubmed_web.universes idxNo:0 { name: "id", ns: "pubmed_web.universes", key:
{ _id: 1 }
}
[initandlisten] Tue Jul 27 17:26:23 done for 4 records 0.001secs
[initandlisten] Tue Jul 27 17:26:23 query pubmed_web.system.indexes reslen:36 nscanned:1 { name:
{ $ne: "_id_" }
} nreturned:0 3ms
[initandlisten] Tue Jul 27 17:26:23 ****
[initandlisten] Tue Jul 27 17:26:23 ****
[initandlisten] Tue Jul 27 17:26:23 need to upgrade database pubmed with pdfile version 4.5, new version: 4.5
[initandlisten] Tue Jul 27 17:26:23 starting upgrade
[initandlisten] Tue Jul 27 17:26:23 pubmed repairDatabase pubmed
[initandlisten] Tue Jul 27 17:26:23 query pubmed.system.namespaces reslen:141 nscanned:3 {} nreturned:3 15ms
Tue Jul 27 17:26:23 allocating new datafile ../../mongo-data/$tmp_repairDatabase_0/pubmed/pubmed.ns, filling with zeroes...
Tue Jul 27 17:26:23 done allocating datafile ../../mongo-data/$tmp_repairDatabase_0/pubmed/pubmed.ns, size: 16MB, took 0 secs
Tue Jul 27 17:26:23 allocating new datafile ../../mongo-data/$tmp_repairDatabase_0/pubmed/pubmed.0, filling with zeroes...
Tue Jul 27 17:26:23 done allocating datafile ../../mongo-data/$tmp_repairDatabase_0/pubmed/pubmed.0, size: 64MB, took 0.009 secs
Tue Jul 27 17:26:23 allocating new datafile ../../mongo-data/$tmp_repairDatabase_0/pubmed/pubmed.1, filling with zeroes...
Tue Jul 27 17:26:23 done allocating datafile ../../mongo-data/$tmp_repairDatabase_0/pubmed/pubmed.1, size: 128MB, took 0 secs
[initandlisten] Tue Jul 27 17:26:23 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049097 nreturned:729 2ms
[initandlisten] Tue Jul 27 17:26:23 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049568 nreturned:744 18ms
[initandlisten] Tue Jul 27 17:26:23 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048846 nreturned:718 1ms
[initandlisten] Tue Jul 27 17:26:23 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049770 nreturned:745 2ms
[initandlisten] Tue Jul 27 17:26:23 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049987 nreturned:750 1ms
[initandlisten] Tue Jul 27 17:26:23 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1050008 nreturned:766 4ms
[initandlisten] Tue Jul 27 17:26:23 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048840 nreturned:764 1ms
[initandlisten] Tue Jul 27 17:26:23 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049219 nreturned:752 1ms
[initandlisten] Tue Jul 27 17:26:23 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049134 nreturned:809 1ms
[initandlisten] Tue Jul 27 17:26:23 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1050037 nreturned:714 5ms
[initandlisten] Tue Jul 27 17:26:23 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1050164 nreturned:780 1ms
[initandlisten] Tue Jul 27 17:26:23 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048883 nreturned:782 1ms
[initandlisten] Tue Jul 27 17:26:23 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048979 nreturned:757 1ms
[initandlisten] Tue Jul 27 17:26:23 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1050139 nreturned:751 1ms
[initandlisten] Tue Jul 27 17:26:23 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049441 nreturned:747 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049871 nreturned:797 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1050023 nreturned:785 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049222 nreturned:759 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049155 nreturned:786 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048796 nreturned:779 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048735 nreturned:804 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1050201 nreturned:800 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049675 nreturned:795 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049452 nreturned:757 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048879 nreturned:779 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1050116 nreturned:770 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049507 nreturned:766 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048591 nreturned:793 1ms
Tue Jul 27 17:26:24 allocating new datafile ../../mongo-data/$tmp_repairDatabase_0/pubmed/pubmed.2, filling with zeroes...
Tue Jul 27 17:26:24 done allocating datafile ../../mongo-data/$tmp_repairDatabase_0/pubmed/pubmed.2, size: 256MB, took 0 secs
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1050002 nreturned:754 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1050166 nreturned:699 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049323 nreturned:776 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048952 nreturned:739 7ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049148 nreturned:817 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049513 nreturned:800 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049481 nreturned:745 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049110 nreturned:757 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049232 nreturned:811 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049865 nreturned:798 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049682 nreturned:883 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1050079 nreturned:754 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049270 nreturned:772 10ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049054 nreturned:795 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1050109 nreturned:801 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048830 nreturned:774 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049447 nreturned:905 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049655 nreturned:721 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048858 nreturned:782 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048943 nreturned:733 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049623 nreturned:776 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049256 nreturned:819 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1050051 nreturned:766 6ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049028 nreturned:804 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049575 nreturned:813 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049513 nreturned:812 6ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049447 nreturned:812 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1050295 nreturned:772 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048752 nreturned:742 13ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049450 nreturned:844 2ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049836 nreturned:821 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049479 nreturned:744 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049769 nreturned:898 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048949 nreturned:812 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1050311 nreturned:747 13ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1050405 nreturned:811 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049136 nreturned:864 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049809 nreturned:781 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048860 nreturned:832 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049310 nreturned:821 1ms
[initandlisten] Tue Jul 27 17:26:24 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049515 nreturned:782 13ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049367 nreturned:753 1ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049405 nreturned:798 1ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1050252 nreturned:822 14ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049040 nreturned:804 8ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049702 nreturned:749 1ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049009 nreturned:750 18ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048741 nreturned:748 9ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049655 nreturned:806 2ms
Tue Jul 27 17:26:25 allocating new datafile ../../mongo-data/$tmp_repairDatabase_0/pubmed/pubmed.3, filling with zeroes...
Tue Jul 27 17:26:25 done allocating datafile ../../mongo-data/$tmp_repairDatabase_0/pubmed/pubmed.3, size: 512MB, took 0.019 secs
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049395 nreturned:759 38ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049765 nreturned:888 1ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049186 nreturned:761 20ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048737 nreturned:759 1ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049728 nreturned:878 16ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049291 nreturned:878 1ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048649 nreturned:748 13ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048988 nreturned:843 14ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049161 nreturned:885 12ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049649 nreturned:834 2ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048688 nreturned:778 3ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049293 nreturned:790 12ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049811 nreturned:843 2ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049103 nreturned:760 1ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049106 nreturned:800 24ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1050036 nreturned:835 1ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1050404 nreturned:813 7ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048879 nreturned:873 14ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048609 nreturned:788 8ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048728 nreturned:904 5ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049168 nreturned:795 2ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048932 nreturned:850 10ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049380 nreturned:742 1ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048764 nreturned:764 5ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049732 nreturned:782 10ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049718 nreturned:800 1ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1069014 nreturned:827 9ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049205 nreturned:840 1ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049602 nreturned:754 16ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049138 nreturned:802 2ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049152 nreturned:779 1ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049128 nreturned:817 9ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048824 nreturned:751 1ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049167 nreturned:830 1ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048935 nreturned:791 1ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049150 nreturned:831 1ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049495 nreturned:843 22ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049144 nreturned:769 5ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048612 nreturned:784 3ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049860 nreturned:811 2ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048727 nreturned:818 1ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1050093 nreturned:790 17ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1048915 nreturned:872 1ms
[initandlisten] Tue Jul 27 17:26:25 getmore pubmed.articles cid:2442835680079681343 getMore: {} bytes:1049279 nreturned:789 24ms
Tue Jul 27 17:26:40 Got signal: 7 (Bus error).
Tue Jul 27 17:26:41 Backtrace:
0x7e5759 0x7fef8326daf0 0x7fef832c0dbb 0x5ef0af 0x5dae53 0x6d7bfe 0x6da2b9 0x6daed1 0x561fcd 0x562508 0x69c8a4 0x69f208 0x6a0c4d 0x6fd4cb 0x7e5dd8 0x7e91dd 0x7e9ff9 0x7eaaf7 0x7f15a9 0x7fef83258c4d
./mongod(_ZN5mongo10abruptQuitEi+0x399) [0x7e5759]
/lib/libc.so.6(+0x33af0) [0x7fef8326daf0]
/lib/libc.so.6(memcpy+0x15b) [0x7fef832c0dbb]
./mongod(_ZN5mongo22fillQueryResultFromObjERNS_10BufBuilderEPNS_12FieldMatcherERNS_7BSONObjEPNS_7DiskLocE+0xbff) [0x5ef0af]
./mongod(_ZN5mongo14processGetMoreEPKcixRNS_5CurOpEiRb+0x393) [0x5dae53]
./mongod(_ZN5mongo15receivedGetMoreERNS_10DbResponseERNS_7MessageERNS_5CurOpE+0x29e) [0x6d7bfe]
./mongod(_ZN5mongo16assembleResponseERNS_7MessageERNS_10DbResponseERKNS_8SockAddrE+0x1309) [0x6da2b9]
./mongod(_ZN5mongo14DBDirectClient4callERNS_7MessageES2_b+0x81) [0x6daed1]
./mongod(_ZN5mongo14DBClientCursor11requestMoreEv+0x2fd) [0x561fcd]
./mongod(_ZN5mongo14DBClientCursor4moreEv+0x58) [0x562508]
./mongod(_ZN5mongo6Cloner4copyEPKcS2_bbbbNS_5QueryE+0x5b4) [0x69c8a4]
./mongod(_ZN5mongo6Cloner2goEPKcRSsRKSsbbbb+0xe88) [0x69f208]
./mongod(_ZN5mongo9cloneFromEPKcRSsRKSsbbbb+0x3d) [0x6a0c4d]
./mongod(_ZN5mongo14repairDatabaseESsRSsbb+0x3eb) [0x6fd4cb]
./mongod(_ZN5mongo11doDBUpgradeERKSsSsPNS_14DataFileHeaderE+0x68) [0x7e5dd8]
./mongod(_ZN5mongo15repairDatabasesEv+0x28d) [0x7e91dd]
./mongod(_ZN5mongo14_initAndListenEiPKc+0x509) [0x7e9ff9]
./mongod(_ZN5mongo13initAndListenEiPKc+0x27) [0x7eaaf7]
./mongod(main+0x6779) [0x7f15a9]
/lib/libc.so.6(__libc_start_main+0xfd) [0x7fef83258c4d]
Tue Jul 27 17:26:41 dbexit:
[initandlisten] Tue Jul 27 17:26:41 shutdown: going to close listening sockets...
[initandlisten] Tue Jul 27 17:26:41 shutdown: going to flush oplog...
[initandlisten] Tue Jul 27 17:26:41 shutdown: going to close sockets...
[initandlisten] Tue Jul 27 17:26:41 shutdown: waiting for fs preallocator...
[initandlisten] Tue Jul 27 17:26:41 shutdown: closing all files...
Tue Jul 27 17:26:41 closeAllFiles() finished
[initandlisten] Tue Jul 27 17:26:41 shutdown: removing fs lock...
Tue Jul 27 17:26:41 dbexit: really exiting now
ERROR: Client::~Client _context should be NULL: initandlisten
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