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This part is missing from SERVER-80120. There is at least another compact call that should use the new freeSpaceTargetMB option. This is the list of all the compact calls without the new option:
src/mongo/db/catalog/index_catalog_impl.cpp:1991: Status status = entry->accessMethod()->compact(opCtx);
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src/mongo/db/index/index_access_method.cpp:735: return this->_newInterface->compact(opCtx);
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src/mongo/db/index/columns_access_method.cpp:512: return _store->compact(opCtx);
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src/mongo/scripting/mozjs/mongo.cpp:588: ptr->compact(cx, args);
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