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    <title>MongoDB Jira</title>
    <link>https://jira.mongodb.org</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>9.7.1</version>
        <build-number>970001</build-number>
        <build-date>13-04-2023</build-date>
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<item>
            <title>[SERVER-1694] Corruption during mapreduce on documents with arrays of binary data.</title>
                <link>https://jira.mongodb.org/browse/SERVER-1694</link>
                <project id="10000" key="SERVER">Core Server</project>
                    <description>&lt;p&gt;Running mapreduce on an input collection that only has 2 different keys (0x00010203 and 0xaabbccdd) results in random keys in the output collection:&lt;/p&gt;

&lt;p&gt;cdc$ ./mr &lt;br/&gt;
{ &quot;result&quot; : &quot;out&quot;, &quot;timeMillis&quot; : 9, &quot;counts&quot; : &lt;/p&gt;
{ &quot;input&quot; : 20, &quot;emit&quot; : 40, &quot;output&quot; : 5 }
&lt;p&gt;, &quot;ok&quot; : 1 }&lt;br/&gt;
key: 00102030&lt;br/&gt;
key: 16000000&lt;br/&gt;
key: 337f0000&lt;br/&gt;
key: 80ad142c&lt;br/&gt;
key: aabbccdd&lt;br/&gt;
cdc$ ./mr &lt;br/&gt;
{ &quot;result&quot; : &quot;out&quot;, &quot;timeMillis&quot; : 9, &quot;counts&quot; : &lt;/p&gt;
{ &quot;input&quot; : 20, &quot;emit&quot; : 40, &quot;output&quot; : 6 }
&lt;p&gt;, &quot;ok&quot; : 1 }&lt;br/&gt;
key: 00000000&lt;br/&gt;
key: 00102030&lt;br/&gt;
key: 16000000&lt;br/&gt;
key: 337f0000&lt;br/&gt;
key: 80bc0f2c&lt;br/&gt;
key: aabbccdd&lt;br/&gt;
cdc$ ./mr &lt;br/&gt;
{ &quot;result&quot; : &quot;out&quot;, &quot;timeMillis&quot; : 9, &quot;counts&quot; : &lt;/p&gt;
{ &quot;input&quot; : 20, &quot;emit&quot; : 40, &quot;output&quot; : 6 }
&lt;p&gt;, &quot;ok&quot; : 1 }&lt;br/&gt;
key: 00102030&lt;br/&gt;
key: 16000000&lt;br/&gt;
key: 337f0000&lt;br/&gt;
key: 7071122c&lt;br/&gt;
key: 803c122c&lt;br/&gt;
key: aabbccdd&lt;br/&gt;
cdc$ &lt;/p&gt;

&lt;p&gt;Steps to reproduce:&lt;/p&gt;

&lt;p&gt;1) insert a few documents with arrays of binary data&lt;br/&gt;
2) run mapreduce that emits bindata from said arrays as keys&lt;br/&gt;
3) notice more keys in output collection than exist in input collection, some are correct, some are random&lt;/p&gt;

&lt;p&gt;I&apos;m quite sure the corruption happens during the mapreduce operation, the bindata arrays are stored correctly in the db itself. However, the mongo js shell has some trouble interpreting it consistently:&lt;/p&gt;

&lt;p&gt;&amp;gt; db.in.findOne( &lt;/p&gt;
{i : 0}
&lt;p&gt;, &lt;/p&gt;
{k : 1}
&lt;p&gt;)&lt;br/&gt;
{&lt;br/&gt;
        &quot;_id&quot; : ObjectId(&quot;4c77f6c1ec4e2dee21a74d9a&quot;),&lt;br/&gt;
        &quot;k&quot; : [&lt;br/&gt;
                BinData(0,&quot;/38AAA==&quot;),&lt;br/&gt;
                BinData(0,&quot;YLzjAQ==&quot;)&lt;br/&gt;
        ]&lt;br/&gt;
}&lt;br/&gt;
&amp;gt; db.in.findOne( &lt;/p&gt;
{i : 0}
&lt;p&gt;, &lt;/p&gt;
{k : 1}
&lt;p&gt;)&lt;br/&gt;
{&lt;br/&gt;
        &quot;_id&quot; : ObjectId(&quot;4c77f6c1ec4e2dee21a74d9a&quot;),&lt;br/&gt;
        &quot;k&quot; : [&lt;br/&gt;
                BinData(0,&quot;AAAAAA==&quot;),&lt;br/&gt;
                BinData(0,&quot;awDM3Q==&quot;)&lt;br/&gt;
        ]&lt;br/&gt;
}&lt;/p&gt;

&lt;p&gt;Again, when accessing the k array via the mongoclient library, the data is NOT corrupted, this bug in the js client could be completely unrelated.&lt;/p&gt;

&lt;p&gt;I&apos;ve attached mr.cpp that reproduces the behaviour.&lt;/p&gt;</description>
                <environment>cdc$ ./mongo --version&lt;br/&gt;
MongoDB shell version: 1.6.1&lt;br/&gt;
&lt;br/&gt;
cdc$ ./mongod --version&lt;br/&gt;
db version v1.6.1, pdfile version 4.5&lt;br/&gt;
Fri Aug 27 13:26:03 git version: c5f5f9a4f3b515dfd5272d373093fd4fd58c95d9&lt;br/&gt;
&lt;br/&gt;
cdc$ ./mongos --version&lt;br/&gt;
Fri Aug 27 13:26:25 ./mongos db version v1.6.1, pdfile version 4.5 starting (--help for usage)&lt;br/&gt;
Fri Aug 27 13:26:25 git version: c5f5f9a4f3b515dfd5272d373093fd4fd58c95d9&lt;br/&gt;
Fri Aug 27 13:26:25 sys info: Linux cdc 2.6.34-rc6-cdc-00063-gbe1066b #32 SMP Sat May 1 02:07:17 EDT 2010 x86_64 BOOST_LIB_VERSION=1_42&lt;br/&gt;
&lt;br/&gt;
cdc$ gcc -v &lt;br/&gt;
Using built-in specs.&lt;br/&gt;
Target: x86_64-linux-gnu&lt;br/&gt;
Configured with: ../src/configure -v --with-pkgversion=&amp;#39;Debian 4.4.4-7&amp;#39; --with-bugurl=&lt;a href=&quot;file:///usr/share/doc/gcc-4.4/README.Bugs&quot;&gt;file:///usr/share/doc/gcc-4.4/README.Bugs&lt;/a&gt; --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --enable-shared --enable-multiarch --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.4 --program-suffix=-4.4 --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc --with-arch-32=i586 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu&lt;br/&gt;
Thread model: posix&lt;br/&gt;
gcc version 4.4.4 (Debian 4.4.4-7) &lt;br/&gt;
&lt;br/&gt;
We&amp;#39;re running two shards (without replica sets), a config server and a mongos. The corruption occurs on a non-sharded db.</environment>
        <key id="12935">SERVER-1694</key>
            <summary>Corruption during mapreduce on documents with arrays of binary data.</summary>
                <type id="1" iconUrl="https://jira.mongodb.org/secure/viewavatar?size=xsmall&amp;avatarId=14703&amp;avatarType=issuetype">Bug</type>
                                            <priority id="2" iconUrl="https://jira.mongodb.org/images/icons/priorities/critical.svg">Critical - P2</priority>
                        <status id="6" iconUrl="https://jira.mongodb.org/images/icons/statuses/closed.png" description="The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.">Closed</status>
                    <statusCategory id="3" key="done" colorName="success"/>
                                    <resolution id="9">Done</resolution>
                                        <assignee username="eliot">Eliot Horowitz</assignee>
                                    <reporter username="gvs">gvs</reporter>
                        <labels>
                    </labels>
                <created>Fri, 27 Aug 2010 17:56:05 +0000</created>
                <updated>Tue, 12 Jul 2016 00:17:52 +0000</updated>
                            <resolved>Fri, 27 Aug 2010 19:00:55 +0000</resolved>
                                    <version>1.6.1</version>
                                    <fixVersion>1.7.0</fixVersion>
                                    <component>Internal Client</component>
                    <component>JavaScript</component>
                    <component>Shell</component>
                                        <votes>1</votes>
                                    <watches>2</watches>
                                                                                                                <comments>
                            <comment id="18258" author="auto" created="Wed, 15 Sep 2010 19:10:20 +0000"  >&lt;p&gt;Author:&lt;/p&gt;
{&apos;login&apos;: &apos;erh&apos;, &apos;name&apos;: &apos;Eliot Horowitz&apos;, &apos;email&apos;: &apos;eliot@10gen.com&apos;}
&lt;p&gt;Message: have to copy BinData in sm in case BSONObj is temp &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-1694&quot; title=&quot;Corruption during mapreduce on documents with arrays of binary data.&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-1694&quot;&gt;&lt;del&gt;SERVER-1694&lt;/del&gt;&lt;/a&gt;&lt;br/&gt;
&lt;a href=&quot;http://github.com/mongodb/mongo/commit/ba964b908b2180d7a0dae7286ea9a8c6a68b5276&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;http://github.com/mongodb/mongo/commit/ba964b908b2180d7a0dae7286ea9a8c6a68b5276&lt;/a&gt;&lt;/p&gt;</comment>
                            <comment id="17497" author="auto" created="Fri, 27 Aug 2010 19:01:33 +0000"  >&lt;p&gt;Author:&lt;/p&gt;
{&apos;login&apos;: &apos;erh&apos;, &apos;name&apos;: &apos;Eliot Horowitz&apos;, &apos;email&apos;: &apos;eliot@10gen.com&apos;}
&lt;p&gt;Message: have to copy BinData in sm in case BSONObj is temp &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-1694&quot; title=&quot;Corruption during mapreduce on documents with arrays of binary data.&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-1694&quot;&gt;&lt;del&gt;SERVER-1694&lt;/del&gt;&lt;/a&gt;&lt;br/&gt;
&lt;a href=&quot;http://github.com/mongodb/mongo/commit/449fbabe26b62250b4974aaec2633cb591e36f28&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;http://github.com/mongodb/mongo/commit/449fbabe26b62250b4974aaec2633cb591e36f28&lt;/a&gt;&lt;/p&gt;</comment>
                            <comment id="17496" author="eliot" created="Fri, 27 Aug 2010 19:00:55 +0000"  >&lt;p&gt;Ok - found the issue.&lt;br/&gt;
Thanks for the good report.&lt;/p&gt;</comment>
                            <comment id="17495" author="gvs" created="Fri, 27 Aug 2010 18:32:41 +0000"  >&lt;p&gt;It&apos;s happening a lot less with the precompiled binaries than with the git sources though. Should we try compiling with a different JS engine (like v8)?&lt;/p&gt;</comment>
                            <comment id="17494" author="eliot" created="Fri, 27 Aug 2010 18:28:10 +0000"  >&lt;p&gt;Ok - about 1/25 times i&apos;m getting a weird key.&lt;/p&gt;</comment>
                            <comment id="17493" author="gvs" created="Fri, 27 Aug 2010 18:25:21 +0000"  >&lt;p&gt;Have you tried running it multiple times?&lt;/p&gt;

&lt;p&gt;I downloaded &lt;a href=&quot;http://fastdl.mongodb.org/linux/mongodb-linux-x86_64-1.6.1.tgz&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;http://fastdl.mongodb.org/linux/mongodb-linux-x86_64-1.6.1.tgz&lt;/a&gt; and used those binaries. I&apos;m still linking with the 1.6.1 client library from git though:&lt;/p&gt;

&lt;p&gt;cdc$  ./mr&lt;br/&gt;
{ &quot;result&quot; : &quot;out&quot;, &quot;timeMillis&quot; : 5, &quot;counts&quot; : &lt;/p&gt;
{ &quot;input&quot; : 20, &quot;emit&quot; : 40, &quot;output&quot; : 3 }
&lt;p&gt;, &quot;ok&quot; : 1 }&lt;br/&gt;
key: 00102030&lt;br/&gt;
key: aabbccdd&lt;br/&gt;
key: b97f0000&lt;br/&gt;
cdc$ ./mr &lt;br/&gt;
{ &quot;result&quot; : &quot;out&quot;, &quot;timeMillis&quot; : 11, &quot;counts&quot; : &lt;/p&gt;
{ &quot;input&quot; : 20, &quot;emit&quot; : 40, &quot;output&quot; : 2 }
&lt;p&gt;, &quot;ok&quot; : 1 }&lt;br/&gt;
key: 00102030&lt;br/&gt;
key: aabbccdd&lt;br/&gt;
cdc$ ./mr &lt;br/&gt;
{ &quot;result&quot; : &quot;out&quot;, &quot;timeMillis&quot; : 11, &quot;counts&quot; : &lt;/p&gt;
{ &quot;input&quot; : 20, &quot;emit&quot; : 40, &quot;output&quot; : 3 }
&lt;p&gt;, &quot;ok&quot; : 1 }&lt;br/&gt;
key: 00102030&lt;br/&gt;
key: aabbccdd&lt;br/&gt;
key: b97f0000&lt;br/&gt;
cdc$ ./mr &lt;br/&gt;
{ &quot;result&quot; : &quot;out&quot;, &quot;timeMillis&quot; : 11, &quot;counts&quot; : &lt;/p&gt;
{ &quot;input&quot; : 20, &quot;emit&quot; : 40, &quot;output&quot; : 2 }
&lt;p&gt;, &quot;ok&quot; : 1 }&lt;br/&gt;
key: 00102030&lt;br/&gt;
key: aabbccdd&lt;br/&gt;
cdc$ pwd&lt;br/&gt;
/home/gvs/ziac/cluster&lt;br/&gt;
cdc$ ./mr &lt;br/&gt;
{ &quot;result&quot; : &quot;out&quot;, &quot;timeMillis&quot; : 11, &quot;counts&quot; : &lt;/p&gt;
{ &quot;input&quot; : 20, &quot;emit&quot; : 40, &quot;output&quot; : 2 }
&lt;p&gt;, &quot;ok&quot; : 1 }&lt;br/&gt;
key: 00102030&lt;br/&gt;
key: aabbccdd&lt;br/&gt;
cdc$ ./mr &lt;br/&gt;
{ &quot;result&quot; : &quot;out&quot;, &quot;timeMillis&quot; : 11, &quot;counts&quot; : &lt;/p&gt;
{ &quot;input&quot; : 20, &quot;emit&quot; : 40, &quot;output&quot; : 2 }
&lt;p&gt;, &quot;ok&quot; : 1 }&lt;br/&gt;
key: 00102030&lt;br/&gt;
key: aabbccdd&lt;br/&gt;
cdc$ ./mr &lt;br/&gt;
{ &quot;result&quot; : &quot;out&quot;, &quot;timeMillis&quot; : 11, &quot;counts&quot; : &lt;/p&gt;
{ &quot;input&quot; : 20, &quot;emit&quot; : 40, &quot;output&quot; : 2 }
&lt;p&gt;, &quot;ok&quot; : 1 }&lt;br/&gt;
key: 00102030&lt;br/&gt;
key: aabbccdd&lt;br/&gt;
cdc$ ./mr &lt;br/&gt;
{ &quot;result&quot; : &quot;out&quot;, &quot;timeMillis&quot; : 11, &quot;counts&quot; : &lt;/p&gt;
{ &quot;input&quot; : 20, &quot;emit&quot; : 40, &quot;output&quot; : 2 }
&lt;p&gt;, &quot;ok&quot; : 1 }&lt;br/&gt;
key: 00102030&lt;br/&gt;
key: aabbccdd&lt;br/&gt;
cdc$ ./mr &lt;br/&gt;
{ &quot;result&quot; : &quot;out&quot;, &quot;timeMillis&quot; : 11, &quot;counts&quot; : &lt;/p&gt;
{ &quot;input&quot; : 20, &quot;emit&quot; : 40, &quot;output&quot; : 2 }
&lt;p&gt;, &quot;ok&quot; : 1 }&lt;br/&gt;
key: 00102030&lt;br/&gt;
key: aabbccdd&lt;br/&gt;
cdc$ ./mr &lt;br/&gt;
{ &quot;result&quot; : &quot;out&quot;, &quot;timeMillis&quot; : 11, &quot;counts&quot; : &lt;/p&gt;
{ &quot;input&quot; : 20, &quot;emit&quot; : 40, &quot;output&quot; : 2 }
&lt;p&gt;, &quot;ok&quot; : 1 }&lt;br/&gt;
key: 00102030&lt;br/&gt;
key: aabbccdd&lt;br/&gt;
cdc$ ./mr &lt;br/&gt;
{ &quot;result&quot; : &quot;out&quot;, &quot;timeMillis&quot; : 11, &quot;counts&quot; : &lt;/p&gt;
{ &quot;input&quot; : 20, &quot;emit&quot; : 40, &quot;output&quot; : 3 }
&lt;p&gt;, &quot;ok&quot; : 1 }&lt;br/&gt;
key: 00102030&lt;br/&gt;
key: aabbccdd&lt;br/&gt;
key: b97f0000&lt;br/&gt;
cdc$ ./mr &lt;br/&gt;
{ &quot;result&quot; : &quot;out&quot;, &quot;timeMillis&quot; : 12, &quot;counts&quot; : &lt;/p&gt;
{ &quot;input&quot; : 20, &quot;emit&quot; : 40, &quot;output&quot; : 3 }
&lt;p&gt;, &quot;ok&quot; : 1 }&lt;br/&gt;
key: 00102030&lt;br/&gt;
key: aabbccdd&lt;br/&gt;
key: b97f0000&lt;br/&gt;
cdc$&lt;/p&gt;</comment>
                            <comment id="17492" author="eliot" created="Fri, 27 Aug 2010 18:12:34 +0000"  >&lt;p&gt;Running your program I get: &lt;/p&gt;


&lt;p&gt;erh@erh-tm1 ~/work/mongo -&amp;gt; g++ -I. mr.cpp -L. -lmongoclient -lpthread -lstdc++ -lboost_system-mt -lboost_thread-mt -lboost_filesystem-mt -lboost_program_options-mt &amp;amp;&amp;amp; ./a.out&lt;br/&gt;
{ &quot;result&quot; : &quot;out&quot;, &quot;timeMillis&quot; : 5, &quot;counts&quot; : &lt;/p&gt;
{ &quot;input&quot; : 20, &quot;emit&quot; : 40, &quot;output&quot; : 2 }
&lt;p&gt;, &quot;ok&quot; : 1 }&lt;br/&gt;
key: 00102030 190&lt;br/&gt;
key: aabbccdd 190&lt;/p&gt;

&lt;p&gt;after changing the print line to:&lt;/p&gt;

&lt;p&gt;		printf(&quot;key: %02x%02x%02x%02x %d\n&quot;,data&lt;span class=&quot;error&quot;&gt;&amp;#91;0&amp;#93;&lt;/span&gt;,data&lt;span class=&quot;error&quot;&gt;&amp;#91;1&amp;#93;&lt;/span&gt;,data&lt;span class=&quot;error&quot;&gt;&amp;#91;2&amp;#93;&lt;/span&gt;,data&lt;span class=&quot;error&quot;&gt;&amp;#91;3&amp;#93;&lt;/span&gt;,o&lt;span class=&quot;error&quot;&gt;&amp;#91;&amp;quot;value&amp;quot;&amp;#93;&lt;/span&gt;.numberInt());&lt;/p&gt;


&lt;p&gt;Can you try this with the official downloads rather than self compiled?  Its likely a spidermonkey compilation issue.&lt;/p&gt;</comment>
                    </comments>
                    <attachments>
                            <attachment id="10405" name="mr.cpp" size="1265" author="gvs" created="Fri, 27 Aug 2010 17:56:05 +0000"/>
                    </attachments>
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