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    <title>MongoDB Jira</title>
    <link>https://jira.mongodb.org</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>9.7.1</version>
        <build-number>970001</build-number>
        <build-date>13-04-2023</build-date>
    </build-info>


<item>
            <title>[SERVER-17751] Make cleanupOrphaned cmd interruptible</title>
                <link>https://jira.mongodb.org/browse/SERVER-17751</link>
                <project id="10000" key="SERVER">Core Server</project>
                    <description>&lt;p&gt;Environment:&lt;/p&gt;

&lt;p&gt;OS: CentOS 6.5/6.6&lt;br/&gt;
MongoDB: 2.6.4, compiled with ssl support&lt;/p&gt;

&lt;p&gt;We are running sharded cluster with 6 replica sets and as per &lt;a href=&quot;http://docs.mongodb.org/v2.6/reference/command/cleanupOrphaned/&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;http://docs.mongodb.org/v2.6/reference/command/cleanupOrphaned/&lt;/a&gt; we are executing following code to clean orphaned documents from sharded collections:&lt;/p&gt;

&lt;p/&gt;
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&lt;table cellspacing=&quot;0&quot; cellpadding=&quot;0&quot; border=&quot;0&quot; width=&quot;100%&quot; style=&quot;font-size: 1em; line-height: 1.4em !important; font-weight: normal; font-style: normal; color: black;&quot;&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;  margin-top: 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: #006699; font-weight: bold; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;var&lt;/span&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; nextKey = {};&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: #006699; font-weight: bold; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;var&lt;/span&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; result;&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&amp;nbsp;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: #006699; font-weight: bold; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;while&lt;/span&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;  ( nextKey != &lt;/span&gt;&lt;span style=&quot;color: #006699; font-weight: bold; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;null&lt;/span&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; ) {&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
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				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;  result = db.runCommand( { cleanupOrphaned: namespace, startingFromKey: nextKey } );&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
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				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&amp;nbsp;&lt;/pre&gt;
			&lt;/td&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;  &lt;/span&gt;&lt;span style=&quot;color: #006699; font-weight: bold; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;if&lt;/span&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; (result.ok != 1)&lt;/span&gt;&lt;/pre&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&amp;nbsp;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;  printjson(result);&lt;/span&gt;&lt;/pre&gt;
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				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&amp;nbsp;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;  nextKey = result.stoppedAtKey;&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   margin-bottom: 10px;  width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;}&lt;/span&gt;&lt;/pre&gt;
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&lt;p/&gt;


&lt;p&gt;For some collections command works as expected. However, on some collections, command hangs waiting for open cursors. Log lines appearing every minute are given below.&lt;/p&gt;

&lt;p/&gt;
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&lt;table cellspacing=&quot;0&quot; cellpadding=&quot;0&quot; border=&quot;0&quot; width=&quot;100%&quot; style=&quot;font-size: 1em; line-height: 1.4em !important; font-weight: normal; font-style: normal; color: black;&quot;&gt;
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				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;  margin-top: 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2015-03-26T12:49:00.180+0100 [conn1736834] rangeDeleter waiting for open cursors in: DATABASE.COLLECTION, min: { _id: MinKey }, max: { _id: 3074457345618258600 }, elapsedSecs: 293637, cursors: [ 1788183098665 1788838028619 ]&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   margin-bottom: 10px;  width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2015-03-26T12:50:00.287+0100 [conn1736834] rangeDeleter waiting for open cursors in: DATABASE.COLLECTION, min: { _id: MinKey }, max: { _id: 3074457345618258600 }, elapsedSecs: 293697, cursors: [ 1788183098665 1788838028619 ]&lt;/span&gt;&lt;/pre&gt;
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&lt;p/&gt;

&lt;p&gt;As can be seen from the logging lines, same cursors are always listed, so is the max key. We are not aware of any other way to stop the command but to switch primary on every replica set. Since there is a lot of collections that are sharded and need to be cleaned of possible orphaned documents, switching primaries whenever clanupOrphaned hangs waiting for open cursors is not a viable solution.&lt;/p&gt;

&lt;p&gt;Is there another way of stopping execution of cleanupOrphaned command? Or is there a way of closing open cursors from server side?&lt;/p&gt;</description>
                <environment></environment>
        <key id="192185">SERVER-17751</key>
            <summary>Make cleanupOrphaned cmd interruptible</summary>
                <type id="1" iconUrl="https://jira.mongodb.org/secure/viewavatar?size=xsmall&amp;avatarId=14703&amp;avatarType=issuetype">Bug</type>
                                            <priority id="3" iconUrl="https://jira.mongodb.org/images/icons/priorities/major.svg">Major - P3</priority>
                        <status id="6" iconUrl="https://jira.mongodb.org/images/icons/statuses/closed.png" description="The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.">Closed</status>
                    <statusCategory id="3" key="done" colorName="success"/>
                                    <resolution id="9">Done</resolution>
                                        <assignee username="kaloian.manassiev@mongodb.com">Kaloian Manassiev</assignee>
                                    <reporter username="ljuba.ned@gmail.com">Ljuba Nedeljkovic</reporter>
                        <labels>
                            <label>orphaned</label>
                    </labels>
                <created>Thu, 26 Mar 2015 15:43:40 +0000</created>
                <updated>Wed, 15 Nov 2017 16:37:16 +0000</updated>
                            <resolved>Wed, 15 Nov 2017 16:36:54 +0000</resolved>
                                                                    <component>Sharding</component>
                                        <votes>2</votes>
                                    <watches>10</watches>
                                                                                                                <comments>
                            <comment id="1726574" author="kaloian.manassiev" created="Wed, 15 Nov 2017 16:36:54 +0000"  >&lt;p&gt;As of version 3.6 (and &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-27921&quot; title=&quot;Add &amp;#39;waitForDelete&amp;#39; functionality to CollectionRangeDeleter&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-27921&quot;&gt;&lt;del&gt;SERVER-27921&lt;/del&gt;&lt;/a&gt; in particular), the &lt;tt&gt;cleanupOrphans&lt;/tt&gt; command uses &lt;a href=&quot;https://github.com/mongodb/mongo/blob/e37db69674486dff9fdac2b5ee41961a8805804b/src/mongo/db/s/cleanup_orphaned_cmd.cpp#L133&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;interruptible wait&lt;/a&gt; for the range deleter to complete, which means that it can be killed.&lt;/p&gt;</comment>
                            <comment id="1634465" author="kaloian.manassiev" created="Fri, 28 Jul 2017 14:01:39 +0000"  >&lt;p&gt;With the new range deleter implementation, this might just work, because we use the interruptible form of waiting on the background range deleter thread to complete. Putting it in 3.5 Desired so we can get back and validate this.&lt;/p&gt;</comment>
                            <comment id="866089" author="renctan" created="Fri, 27 Mar 2015 15:03:56 +0000"  >&lt;p&gt;Currently there is no way to stop the cleanupOrphaned command. You can forcefully close a cursor by issuing a killCursor against the cursor id. The mongo shell currently doesn&apos;t have this functionality exposed (see &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-5813&quot; title=&quot;Create a shell helper to kill a cursor by id&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-5813&quot;&gt;&lt;del&gt;SERVER-5813&lt;/del&gt;&lt;/a&gt;), but you can use another driver that supports it.&lt;/p&gt;</comment>
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