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    <title>MongoDB Jira</title>
    <link>https://jira.mongodb.org</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>9.7.1</version>
        <build-number>970001</build-number>
        <build-date>13-04-2023</build-date>
    </build-info>


<item>
            <title>[SERVER-19126] error: { &quot;$err&quot; : &quot;assertion src/mongo/db/storage/extent_manager.cpp:109&quot; }</title>
                <link>https://jira.mongodb.org/browse/SERVER-19126</link>
                <project id="10000" key="SERVER">Core Server</project>
                    <description>&lt;p&gt;Hi,&lt;br/&gt;
We are using mongodb version 2.6.10 we are getting fallowing error ,&lt;/p&gt;

&lt;p&gt;we are not able to get backup and and even read the some collection from db.&lt;/p&gt;

&lt;p&gt;please guide how to retrieve date from such collection also cause and solution of these problem&lt;/p&gt;


&lt;p&gt;Error:&lt;/p&gt;

&lt;p/&gt;
&lt;div id=&quot;syntaxplugin&quot; class=&quot;syntaxplugin&quot; style=&quot;border: 1px dashed #bbb; border-radius: 5px !important; overflow: auto; max-height: 30em;&quot;&gt;
&lt;table cellspacing=&quot;0&quot; cellpadding=&quot;0&quot; border=&quot;0&quot; width=&quot;100%&quot; style=&quot;font-size: 1em; line-height: 1.4em !important; font-weight: normal; font-style: normal; color: black;&quot;&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;  margin-top: 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;rdp_mdb.tinyurlmd Assertion failure n &amp;gt;= 0 &amp;amp;&amp;amp; n &amp;lt; static_cast&amp;lt;int&amp;gt;(_files.size()) src\mongo\db\storage\extent_manager.cpp 109&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;mongod.exe    ...\src\mongo\util\log.cpp(127)                                       mongo::logContext+0xa7&lt;/span&gt;&lt;/pre&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;mongod.exe    ...\src\mongo\util\assert_util.cpp(114)                               mongo::verifyFailed+0x166&lt;/span&gt;&lt;/pre&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;mongod.exe    ...\src\mongo\db\storage\extent_manager.cpp(110)                      mongo::ExtentManager::_getOpenFile+0xc4&lt;/span&gt;&lt;/pre&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;mongod.exe    ...\src\mongo\db\storage\extent_manager.cpp(227)                      mongo::ExtentManager::getExtent+0x25&lt;/span&gt;&lt;/pre&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;mongod.exe    ...\src\mongo\db\catalog\collection.cpp(401)                          mongo::Collection::storageSize+0x87&lt;/span&gt;&lt;/pre&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;mongod.exe    ...\src\mongo\db\dbcommands.cpp(1725)                                 mongo::_runCommands+0x40f&lt;/span&gt;&lt;/pre&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;mongod.exe    ...\src\mongo\db\query\new_find.cpp(125)                              mongo::runCommands+0x4c&lt;/span&gt;&lt;/pre&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;mongod.exe    ...\src\mongo\db\query\new_find.cpp(442)                              mongo::newRunQuery+0x32c&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;mongod.exe    ...\src\mongo\db\instance.cpp(439)                                    mongo::assembleResponse+0x32f&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;mongod.exe    ...\src\mongo\db\db.cpp(204)                                          mongo::MyMessageHandler::process+0x11f&lt;/span&gt;&lt;/pre&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;mongod.exe    ...\src\mongo\util\net\message_server_port.cpp(210)                   mongo::PortMessageServer::handleIncomingMsg+0x4fc&lt;/span&gt;&lt;/pre&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;mongod.exe    ...\src\third_party\boost\boost\thread\detail\thread.hpp(62)          boost::detail::thread_data&amp;lt;boost::_bi::bind_t&amp;lt;void *,void * (__cdecl*)(void *),boost::_bi::list1&amp;lt;boost::_bi::value&amp;lt;mongo::PortMessageServer::HandleIncomingMsgParam *&amp;gt; &amp;gt; &amp;gt; &amp;gt;::run+0x9&lt;/span&gt;&lt;/pre&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;mongod.exe    ...\src\third_party\boost\libs\thread\src\win32\thread.cpp(16707566)  boost::`anonymous namespace&apos;::thread_start_function+0x7b&lt;/span&gt;&lt;/pre&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   margin-bottom: 10px;  width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;kernel32.dll                                                                        BaseThreadInitThunk+0x12&lt;/span&gt;&lt;/pre&gt;
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&lt;/div&gt;
&lt;p/&gt;</description>
                <environment></environment>
        <key id="212944">SERVER-19126</key>
            <summary>error: { &quot;$err&quot; : &quot;assertion src/mongo/db/storage/extent_manager.cpp:109&quot; }</summary>
                <type id="1" iconUrl="https://jira.mongodb.org/secure/viewavatar?size=xsmall&amp;avatarId=14703&amp;avatarType=issuetype">Bug</type>
                                            <priority id="3" iconUrl="https://jira.mongodb.org/images/icons/priorities/major.svg">Major - P3</priority>
                        <status id="6" iconUrl="https://jira.mongodb.org/images/icons/statuses/closed.png" description="The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.">Closed</status>
                    <statusCategory id="3" key="done" colorName="success"/>
                                    <resolution id="4">Incomplete</resolution>
                                        <assignee username="sam.kleinman">Sam Kleinman</assignee>
                                    <reporter username="Kishorp">Kishor Panpatte [X]</reporter>
                        <labels>
                    </labels>
                <created>Thu, 25 Jun 2015 08:36:34 +0000</created>
                <updated>Mon, 10 Aug 2015 18:00:25 +0000</updated>
                            <resolved>Mon, 10 Aug 2015 18:00:25 +0000</resolved>
                                    <version>2.6.10</version>
                                                    <component>Stability</component>
                                        <votes>0</votes>
                                    <watches>4</watches>
                                                                                                                <comments>
                            <comment id="995258" author="ramon.fernandez" created="Mon, 3 Aug 2015 18:38:52 +0000"  >&lt;p&gt;&lt;a href=&quot;https://jira.mongodb.org/secure/ViewProfile.jspa?name=Kishorp&quot; class=&quot;user-hover&quot; rel=&quot;Kishorp&quot;&gt;Kishorp&lt;/a&gt;, we haven&apos;t heard back from you for some time. If this is still an issue for you, can you please post the information requested by Sam above? This type of error messages signal data corruption, typically caused by a flaky storage layer, networking errors, or interference with files in &lt;tt&gt;dbpath&lt;/tt&gt; (e.g.: improper use of snapshots). Sam&apos;s questions should help us get to the source of the corruption.&lt;/p&gt;

&lt;p&gt;Thanks,&lt;br/&gt;
Ram&#243;n.&lt;/p&gt;</comment>
                            <comment id="957168" author="samk" created="Thu, 2 Jul 2015 19:16:35 +0000"  >&lt;p&gt;Hello,&lt;/p&gt;

&lt;p&gt;To help understand this issue a bit better, I&apos;d like to ask you a few questions about your deployment and this instance. &lt;/p&gt;

&lt;ol&gt;
	&lt;li&gt;Is this instance part of a replica set? If so what role was the member when you encountered this issue?&lt;/li&gt;
	&lt;li&gt;Does this instance use journaling?&lt;/li&gt;
	&lt;li&gt;Does this instance use the &lt;tt&gt;directoryPerDb&lt;/tt&gt; setting?&lt;/li&gt;
	&lt;li&gt;What kind of underlying storage mechanism are you using? Are the storage devices attached locally or over the network? Are the disks SSDs or HDDs? What kind of RAID and/or volume management system are you using?&lt;/li&gt;
	&lt;li&gt;Have you manipulated (coppied or moved) the underling database files?&lt;/li&gt;
	&lt;li&gt;Have you ever restored this instance from backups?&lt;/li&gt;
	&lt;li&gt;What method do you use to create back ups?&lt;/li&gt;
&lt;/ol&gt;


&lt;p&gt;Thanks for this report and sorry again for the inconvenience.&lt;/p&gt;

&lt;p&gt;Regards,&lt;br/&gt;
sam&lt;/p&gt;</comment>
                            <comment id="950513" author="kishorp" created="Thu, 25 Jun 2015 14:02:43 +0000"  >&lt;p&gt;Hi Ramon,&lt;/p&gt;

&lt;p&gt;only below log are display from mongodb while we are applying find query on collection.&lt;/p&gt;

&lt;p&gt;==logs==&lt;/p&gt;

&lt;p&gt;2015-06-25T19:19:31.683+0530 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn2&amp;#93;&lt;/span&gt; uh oh: 1&lt;br/&gt;
2015-06-25T19:19:31.683+0530 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn2&amp;#93;&lt;/span&gt; rdp_mdb.tinyurlmd Assertion failure n &amp;gt;= 0 &amp;amp;&amp;amp; n &amp;lt; static_cast&amp;lt;int&amp;gt;(_files.size()) src\mongo\db\storage\extent_manager.cpp 109&lt;br/&gt;
2015-06-25T19:19:32.525+0530 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn2&amp;#93;&lt;/span&gt; mongod.exe    ...\src\mongo\util\log.cpp(127)                                       mongo::logContext+0xa7&lt;br/&gt;
2015-06-25T19:19:32.525+0530 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn2&amp;#93;&lt;/span&gt; mongod.exe    ...\src\mongo\util\assert_util.cpp(114)                               mongo::verifyFailed+0x166&lt;br/&gt;
2015-06-25T19:19:32.525+0530 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn2&amp;#93;&lt;/span&gt; mongod.exe    ...\src\mongo\db\storage\extent_manager.cpp(110)                      mongo::ExtentManager::_getOpenFile+0xc4&lt;br/&gt;
2015-06-25T19:19:32.525+0530 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn2&amp;#93;&lt;/span&gt; mongod.exe    ...\src\mongo\db\storage\extent_manager.cpp(227)                      mongo::ExtentManager::getExtent+0x25&lt;br/&gt;
2015-06-25T19:19:32.525+0530 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn2&amp;#93;&lt;/span&gt; mongod.exe    ...\src\mongo\db\catalog\collection.cpp(401)                          mongo::Collection::storageSize+0x87&lt;br/&gt;
2015-06-25T19:19:32.525+0530 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn2&amp;#93;&lt;/span&gt; mongod.exe    ...\src\mongo\db\dbcommands.cpp(1075)                                 mongo::CollectionStats::run+0x4bd&lt;br/&gt;
2015-06-25T19:19:32.525+0530 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn2&amp;#93;&lt;/span&gt; mongod.exe    ...\src\mongo\db\dbcommands.cpp(1388)                                 mongo::_execCommand+0x66&lt;br/&gt;
2015-06-25T19:19:32.525+0530 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn2&amp;#93;&lt;/span&gt; mongod.exe    ...\src\mongo\db\dbcommands.cpp(1620)                                 mongo::Command::execCommand+0xb9d&lt;br/&gt;
2015-06-25T19:19:32.525+0530 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn2&amp;#93;&lt;/span&gt; mongod.exe    ...\src\mongo\db\dbcommands.cpp(1725)                                 mongo::_runCommands+0x40f&lt;br/&gt;
2015-06-25T19:19:32.525+0530 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn2&amp;#93;&lt;/span&gt; mongod.exe    ...\src\mongo\db\query\new_find.cpp(125)                              mongo::runCommands+0x4c&lt;br/&gt;
2015-06-25T19:19:32.525+0530 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn2&amp;#93;&lt;/span&gt; mongod.exe    ...\src\mongo\db\query\new_find.cpp(442)                              mongo::newRunQuery+0x32c&lt;br/&gt;
2015-06-25T19:19:32.525+0530 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn2&amp;#93;&lt;/span&gt; mongod.exe    ...\src\mongo\db\instance.cpp(269)                                    mongo::receivedQuery+0x311&lt;br/&gt;
2015-06-25T19:19:32.525+0530 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn2&amp;#93;&lt;/span&gt; mongod.exe    ...\src\mongo\db\instance.cpp(439)                                    mongo::assembleResponse+0x32f&lt;br/&gt;
2015-06-25T19:19:32.525+0530 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn2&amp;#93;&lt;/span&gt; mongod.exe    ...\src\mongo\db\db.cpp(204)                                          mongo::MyMessageHandler::process+0x11f&lt;br/&gt;
2015-06-25T19:19:32.525+0530 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn2&amp;#93;&lt;/span&gt; mongod.exe    ...\src\mongo\util\net\message_server_port.cpp(210)                   mongo::PortMessageServer::handleIncomingMsg+0x4fc&lt;br/&gt;
2015-06-25T19:19:32.525+0530 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn2&amp;#93;&lt;/span&gt; mongod.exe    ...\src\third_party\boost\boost\thread\detail\thread.hpp(62)          boost::detail::thread_data&amp;lt;boost::&lt;em&gt;bi::bind_t&amp;lt;void &lt;b&gt;,void * (&lt;/em&gt;_cdecl&lt;/b&gt;)(void *),boost::_bi::list1&amp;lt;boost::_bi::value&amp;lt;mongo::PortMessageServer::HandleIncomingMsgParam *&amp;gt; &amp;gt; &amp;gt; &amp;gt;::run+0x9&lt;br/&gt;
2015-06-25T19:19:32.525+0530 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn2&amp;#93;&lt;/span&gt; mongod.exe    ...\src\third_party\boost\libs\thread\src\win32\thread.cpp(16707566)  boost::`anonymous namespace&apos;::thread_start_function+0x7b&lt;br/&gt;
2015-06-25T19:19:32.525+0530 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn2&amp;#93;&lt;/span&gt; mongod.exe    f:\dd\vctools\crt_bld\self_x86\crt\src\threadex.c(314)                _callthreadstartex+0x1b&lt;br/&gt;
2015-06-25T19:19:32.525+0530 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn2&amp;#93;&lt;/span&gt; mongod.exe    f:\dd\vctools\crt_bld\self_x86\crt\src\threadex.c(292)                _threadstartex+0x64&lt;br/&gt;
2015-06-25T19:19:32.525+0530 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn2&amp;#93;&lt;/span&gt; kernel32.dll                                                                        BaseThreadInitThunk+0x12&lt;br/&gt;
2015-06-25T19:19:32.525+0530 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn2&amp;#93;&lt;/span&gt; rdp_mdb.tinyurlmd&lt;br/&gt;
2015-06-25T19:19:32.525+0530 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn2&amp;#93;&lt;/span&gt; command rdp_mdb.$cmd command: collStats &lt;/p&gt;
{ collStats: &quot;tinyurlmd&quot;, scale: 1 }
&lt;p&gt; ntoreturn:1 keyUpdates:0 numYields:0 locks(micros) r:849254 reslen:187 849ms&lt;br/&gt;
2015-06-25T19:19:56.431+0530 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; connection accepted from 127.0.0.1:49884 #6 (6 connections now open)&lt;/p&gt;





</comment>
                            <comment id="950433" author="ramon.fernandez" created="Thu, 25 Jun 2015 12:52:12 +0000"  >&lt;p&gt;&lt;a href=&quot;https://jira.mongodb.org/secure/ViewProfile.jspa?name=Kishorp&quot; class=&quot;user-hover&quot; rel=&quot;Kishorp&quot;&gt;Kishorp&lt;/a&gt;, can you please upload more detailed logs from this server? There are lines before the log snippet above that may contain useful information for diagnosing this issue.&lt;/p&gt;

&lt;p&gt;Thanks,&lt;br/&gt;
Ram&#243;n.&lt;/p&gt;</comment>
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