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    <title>MongoDB Jira</title>
    <link>https://jira.mongodb.org</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>9.7.1</version>
        <build-number>970001</build-number>
        <build-date>13-04-2023</build-date>
    </build-info>


<item>
            <title>[SERVER-19633] Fatal Assertion 16360 during initial sync</title>
                <link>https://jira.mongodb.org/browse/SERVER-19633</link>
                <project id="10000" key="SERVER">Core Server</project>
                    <description>&lt;p&gt;After provisioning a new database server, and adding it to our existing replica set, we got this error during the initial sync.  A large portion of the data transferred successfully before we got the error.&lt;/p&gt;

&lt;p&gt;The duplicate key error mentioned in the logs does not exist on the primary. The index in question (on Primary) is:&lt;/p&gt;
&lt;p/&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;  margin-top: 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;	{&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;		&quot;v&quot; : 0,&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;		&quot;unique&quot; : true,&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;		&quot;key&quot; : {&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;			&quot;linkedin_ids&quot; : 1&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;		},&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;		&quot;name&quot; : &quot;linkedin_ids_1&quot;,&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;		&quot;ns&quot; : &quot;datafox.mappings&quot;,&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;		&quot;sparse&quot; : true,&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;		&quot;background&quot; : true,&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;		&quot;safe&quot; : null&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   margin-bottom: 10px;  width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;	}&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
			&lt;/tbody&gt;
&lt;/table&gt;
&lt;/div&gt;
&lt;p/&gt;

&lt;p&gt;The pre-existing Primary and Secondary hosts are running 2.6.9, but the new server (on which the error occurs) is running 2.6.10.&lt;/p&gt;

&lt;p&gt;We&apos;ve tried to bring this new host up twice, and got the same error both times. (Though on different objects)&lt;/p&gt;

&lt;p/&gt;
&lt;div id=&quot;syntaxplugin&quot; class=&quot;syntaxplugin&quot; style=&quot;border: 1px dashed #bbb; border-radius: 5px !important; overflow: auto; max-height: 30em;&quot;&gt;
&lt;table cellspacing=&quot;0&quot; cellpadding=&quot;0&quot; border=&quot;0&quot; width=&quot;100%&quot; style=&quot;font-size: 1em; line-height: 1.4em !important; font-weight: normal; font-style: normal; color: black;&quot;&gt;
		&lt;tbody &gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;  margin-top: 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2015-07-27T20:48:29.379-0700 [initandlisten] connection accepted from 172.31.16.82:37930 #825633 (318 connections now open)&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2015-07-27T20:48:29.488-0700 [initandlisten] connection accepted from 172.31.10.102:60198 #825634 (319 connections now open)&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2015-07-27T20:48:29.531-0700 [repl writer worker 2] ERROR: writer worker caught exception:  :: caused by :: 11000 E11000 duplicate key error index: datafox.mappings.$linkedin_ids_1  dup key: { : undefined } on: { ts: Timestamp 1438054759000|1, h: -7888321465560204017, v: 2, op: &quot;u&quot;, ns: &quot;datafox.mappings&quot;, o2: { _id: ObjectId(&apos;54fdb9c9998e85da06001fd7&apos;) }, o: { $set: { mtime: new Date(1438054759071), urls.1: { url: &quot;www.boosharticles.com/&quot;, url_domain: &quot;boosharticles.com&quot;, _id: ObjectId(&apos;55b6f96701c3755e3800f0c4&apos;) }, __v: 1 } } }&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2015-07-27T20:48:29.531-0700 [repl writer worker 2] Fatal Assertion 16360&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2015-07-27T20:48:29.531-0700 [repl writer worker 2] &lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&amp;nbsp;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   margin-bottom: 10px;  width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;***aborting after fassert() failure&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
			&lt;/tbody&gt;
&lt;/table&gt;
&lt;/div&gt;
&lt;p/&gt;</description>
                <environment></environment>
        <key id="223081">SERVER-19633</key>
            <summary>Fatal Assertion 16360 during initial sync</summary>
                <type id="1" iconUrl="https://jira.mongodb.org/secure/viewavatar?size=xsmall&amp;avatarId=14703&amp;avatarType=issuetype">Bug</type>
                                            <priority id="3" iconUrl="https://jira.mongodb.org/images/icons/priorities/major.svg">Major - P3</priority>
                        <status id="6" iconUrl="https://jira.mongodb.org/images/icons/statuses/closed.png" description="The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.">Closed</status>
                    <statusCategory id="3" key="done" colorName="success"/>
                                    <resolution id="9">Done</resolution>
                                        <assignee username="ramon.fernandez@mongodb.com">Ramon Fernandez Marina</assignee>
                                    <reporter username="jr@datafox.co">John Fisher</reporter>
                        <labels>
                    </labels>
                <created>Tue, 28 Jul 2015 18:15:29 +0000</created>
                <updated>Wed, 25 Nov 2015 14:48:40 +0000</updated>
                            <resolved>Sat, 10 Oct 2015 13:33:40 +0000</resolved>
                                    <version>2.6.9</version>
                    <version>2.6.10</version>
                                                    <component>Replication</component>
                                        <votes>0</votes>
                                    <watches>2</watches>
                                                                                                                <comments>
                            <comment id="1057289" author="ramon.fernandez" created="Sat, 10 Oct 2015 13:33:25 +0000"  >&lt;p&gt;&lt;a href=&quot;https://jira.mongodb.org/secure/ViewProfile.jspa?name=jr%40datafox.co&quot; class=&quot;user-hover&quot; rel=&quot;jr@datafox.co&quot;&gt;jr@datafox.co&lt;/a&gt;, thanks for uploading the logs and for your patience. Unfortunately we haven&apos;t been able to ascertain that it was a bug in &lt;tt&gt;mongod&lt;/tt&gt; that caused this behavior. &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-19794?focusedCommentId=1019447&amp;amp;page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel#comment-1019447&quot; class=&quot;external-link&quot; rel=&quot;nofollow&quot;&gt;This comment&lt;/a&gt; in &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-19794&quot; title=&quot;Fatal Assertion 16360: duplicate key error during replication&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-19794&quot;&gt;&lt;del&gt;SERVER-19794&lt;/del&gt;&lt;/a&gt; hints at what issues (other than a possible bug in &lt;tt&gt;mongod&lt;/tt&gt;) may have triggered this, but without catching the exact moment when the document is inserted/updated in the secondary node it&apos;s not possible to get enough information to track down exactly what triggered this condition.&lt;/p&gt;

&lt;p&gt;A possible workaround is to &lt;a href=&quot;http://docs.mongodb.org/manual/tutorial/resync-replica-set-member/#resync-a-member-of-a-replica-set&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;resync this secondary node&lt;/a&gt;. Depending on the size of the data this may be a long operation, so one thing you may want to try first is to &lt;a href=&quot;http://docs.mongodb.org/manual/tutorial/build-indexes-on-replica-sets/#build-indexes-on-replica-sets&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;rebuild the &lt;tt&gt;linkedin_ids&lt;/tt&gt; index on the secondary node&lt;/a&gt; first.&lt;/p&gt;

&lt;p&gt;On the off chance that this issue was caused by a bug in v0 indexes, you may want to consider rebuilding this index on the primary as well to update it to v1.&lt;/p&gt;

&lt;p&gt;Sorry you run into this, and I hope the workaround provided above allows you to get you back up and running.&lt;/p&gt;

&lt;p&gt;Regards,&lt;br/&gt;
Ram&#243;n.&lt;/p&gt;</comment>
                            <comment id="1018656" author="ramon.fernandez" created="Mon, 31 Aug 2015 20:45:16 +0000"  >&lt;p&gt;Hi &lt;a href=&quot;https://jira.mongodb.org/secure/ViewProfile.jspa?name=jr%40datafox.co&quot; class=&quot;user-hover&quot; rel=&quot;jr@datafox.co&quot;&gt;jr@datafox.co&lt;/a&gt;, apologies for the radio silence. This is to let you know that we&apos;re still investigating this issue alongside &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-19794&quot; title=&quot;Fatal Assertion 16360: duplicate key error during replication&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-19794&quot;&gt;&lt;del&gt;SERVER-19794&lt;/del&gt;&lt;/a&gt;, which exhibits the same symptoms. We&apos;ll update this ticket when we know more.&lt;/p&gt;

&lt;p&gt;Thanks for your patience,&lt;br/&gt;
Ram&#243;n.&lt;/p&gt;</comment>
                            <comment id="993380" author="jr@datafox.co" created="Thu, 30 Jul 2015 21:39:07 +0000"  >&lt;p&gt;Here is the full log from the replication fatal assertion issue.&lt;/p&gt;</comment>
                            <comment id="993285" author="ramon.fernandez" created="Thu, 30 Jul 2015 19:51:59 +0000"  >&lt;p&gt;&lt;a href=&quot;https://jira.mongodb.org/secure/ViewProfile.jspa?name=jr%40datafox.co&quot; class=&quot;user-hover&quot; rel=&quot;jr@datafox.co&quot;&gt;jr@datafox.co&lt;/a&gt;, which version of MongoDB was this index created with? As you may have noticed, the version number is 0, which corresponds to an old version; if you were to create an index with 2.6.9 the version would be 1.&lt;/p&gt;

&lt;p&gt;I&apos;m asking because this may be the source of the issue: when I try to reproduce this assertion and I create a 2-node replica set running 2.6.9, a v0 index does replicate as a v0 index &amp;#8211; but when I add a 2.6.10 node the index is built as v1. While I haven&apos;t been able to trigger the assertion I&apos;m suspecting index versions may be the issue.&lt;/p&gt;

&lt;p&gt;I&apos;d like to get full logs for the 2.6.10 node since startup until it aborts replication and shuts down. If you don&apos;t have them but are willing to repeat the experiment I&apos;d like to ask you to start &lt;tt&gt;mongod&lt;/tt&gt; with &lt;tt&gt;-vv&lt;/tt&gt; to get more verbose logs. Is this something you can do to help us track down the source of the problem?&lt;/p&gt;

&lt;p&gt;Thanks,&lt;br/&gt;
Ram&#243;n.&lt;/p&gt;</comment>
                            <comment id="993069" author="jr@datafox.co" created="Thu, 30 Jul 2015 16:27:56 +0000"  >&lt;p&gt;Any updates?&lt;/p&gt;</comment>
                    </comments>
                <issuelinks>
                            <issuelinktype id="10012">
                    <name>Related</name>
                                            <outwardlinks description="related to">
                                        <issuelink>
            <issuekey id="224388">SERVER-19794</issuekey>
        </issuelink>
                            </outwardlinks>
                                                        </issuelinktype>
                    </issuelinks>
                <attachments>
                            <attachment id="84054" name="mongod.log-20150728.gz" size="21624580" author="jr@datafox.co" created="Thu, 30 Jul 2015 21:39:07 +0000"/>
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