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    <title>MongoDB Jira</title>
    <link>https://jira.mongodb.org</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>9.7.1</version>
        <build-number>970001</build-number>
        <build-date>13-04-2023</build-date>
    </build-info>


<item>
            <title>[SERVER-24596] Deadlock waiting for majority snapshot during map reduce output stage</title>
                <link>https://jira.mongodb.org/browse/SERVER-24596</link>
                <project id="10000" key="SERVER">Core Server</project>
                    <description>&lt;p&gt;When running the mapreduce.shardedfinish command against a mongod with majority reads enabled, it&apos;s possible to deadlock.  This is because we take a global lock &lt;a href=&quot;https://github.com/mongodb/mongo/blob/master/src/mongo/db/commands/mr.cpp#L585&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;here&lt;/a&gt;, then use DBDirectClient to run a count(), which in turn will use AutoGetCollectionForRead to take database locks which in turn calls ReplicationCoordinatorImpl::waitUntilSnapshotCommitted.  AugoGetCollectionForRead attempts to yield its locks when waiting for the snapshot, but it won&apos;t be able to yield the global lock held by the map reduce code above where it called into DBDirectClient.&lt;/p&gt;</description>
                <environment></environment>
        <key id="294202">SERVER-24596</key>
            <summary>Deadlock waiting for majority snapshot during map reduce output stage</summary>
                <type id="1" iconUrl="https://jira.mongodb.org/secure/viewavatar?size=xsmall&amp;avatarId=14703&amp;avatarType=issuetype">Bug</type>
                                            <priority id="3" iconUrl="https://jira.mongodb.org/images/icons/priorities/major.svg">Major - P3</priority>
                        <status id="6" iconUrl="https://jira.mongodb.org/images/icons/statuses/closed.png" description="The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.">Closed</status>
                    <statusCategory id="3" key="done" colorName="success"/>
                                    <resolution id="9">Done</resolution>
                                        <assignee username="marko.vojvodic@mongodb.com">Marko Vojvodic</assignee>
                                    <reporter username="spencer@mongodb.com">Spencer Brody</reporter>
                        <labels>
                    </labels>
                <created>Wed, 15 Jun 2016 18:23:45 +0000</created>
                <updated>Sat, 19 Nov 2016 00:05:30 +0000</updated>
                            <resolved>Mon, 14 Nov 2016 14:51:03 +0000</resolved>
                                                    <fixVersion>3.4.0-rc4</fixVersion>
                                    <component>MapReduce</component>
                                        <votes>0</votes>
                                    <watches>7</watches>
                                                                                                                <comments>
                            <comment id="1433212" author="xgen-internal-githook" created="Mon, 14 Nov 2016 14:49:19 +0000"  >&lt;p&gt;Author:&lt;/p&gt;
{u&apos;username&apos;: u&apos;m-vojvodic&apos;, u&apos;name&apos;: u&apos;Marko Vojvodic&apos;, u&apos;email&apos;: u&apos;marko.vojvodic@mongodb.com&apos;}
&lt;p&gt;Message: &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-24596&quot; title=&quot;Deadlock waiting for majority snapshot during map reduce output stage&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-24596&quot;&gt;&lt;del&gt;SERVER-24596&lt;/del&gt;&lt;/a&gt; Replace DBDirectClient::count call with Collection::numRecords to avoid deadlock in State::postProcessCollection&lt;br/&gt;
Branch: master&lt;br/&gt;
&lt;a href=&quot;https://github.com/mongodb/mongo/commit/493b1f4bb89d721e630bcd99b1aac2808c8a5161&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;https://github.com/mongodb/mongo/commit/493b1f4bb89d721e630bcd99b1aac2808c8a5161&lt;/a&gt;&lt;/p&gt;</comment>
                            <comment id="1295614" author="milkie" created="Wed, 15 Jun 2016 18:43:10 +0000"  >&lt;p&gt;I think the easiest way to fix this is to fix the map/reduce code that is using DBDirectClient to run count.  It appears to be written that way now simply because it is the original code that Antoine and Tony wrote back in 2010 and hasn&apos;t been updated to use newer server APIs.&lt;/p&gt;</comment>
                            <comment id="1295600" author="spencer" created="Wed, 15 Jun 2016 18:33:31 +0000"  >&lt;p&gt;Stack trace from BF-2498 that demonstrates this issue when attempting to run the shardedfinish stage against a config server included below.  It was a bug that the mapReduce output was running against the config server, but I suspect the same issue could exist against a shard running with majority reads enabled.&lt;/p&gt;

&lt;p/&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;  margin-top: 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; [2016/05/26 14:43:07.504] Thread 932 (Thread 0x2b1450b7a940 (LWP 19928)):&lt;/span&gt;&lt;/pre&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; [2016/05/26 14:43:07.504] #0  0x00002b1422581019 in pthread_cond_wait@@GLIBC_2.3.2 ()&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; [2016/05/26 14:43:07.504]    from /lib64/libpthread.so.0&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; [2016/05/26 14:43:07.504] #1  0x0000000001ef870c in std::condition_variable::wait(std::unique_lock&amp;lt;std::mutex&amp;gt;&amp;amp;) ()&lt;/span&gt;&lt;/pre&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; [2016/05/26 14:43:07.504] #2  0x000000000108d14b in mongo::repl::ReplicationCoordinatorImpl::waitUntilSnapshotCommitted(mongo::OperationContext*, mongo::SnapshotName const&amp;amp;) ()&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; [2016/05/26 14:43:07.504] #3  0x0000000000ca99a6 in mongo::AutoGetCollectionForRead::_ensureMajorityCommittedSnapshotIsValid(mongo::NamespaceString const&amp;amp;) ()&lt;/span&gt;&lt;/pre&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; [2016/05/26 14:43:07.504] #4  0x0000000000ca9b8e in mongo::AutoGetCollectionForRead::AutoGetCollectionForRead(mongo::OperationContext*, mongo::NamespaceString const&amp;amp;) ()&lt;/span&gt;&lt;/pre&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; [2016/05/26 14:43:07.504] #5  0x0000000000be7fe6 in mongo::(anonymous namespace)::CmdCount::run(mongo::OperationContext*, std::__cxx11::basic_string&amp;lt;char, std::char_traits&amp;lt;char&amp;gt;, std::allocator&amp;lt;char&amp;gt; &amp;gt; const&amp;amp;, mongo::BSONObj&amp;amp;, int, std::__cxx11::basic_string&amp;lt;char, std::char_traits&amp;lt;char&amp;gt;, std::allocator&amp;lt;char&amp;gt; &amp;gt;&amp;amp;, mongo::BSONObjBuilder&amp;amp;) ()&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; [2016/05/26 14:43:07.504] #6  0x0000000000cb5370 in mongo::DBDirectClient::count(std::__cxx11::basic_string&amp;lt;char, std::char_traits&amp;lt;char&amp;gt;, std::allocator&amp;lt;char&amp;gt; &amp;gt; const&amp;amp;, mongo::BSONObj const&amp;amp;, int, int, int) ()&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; [2016/05/26 14:43:07.504] #7  0x0000000000c2e183 in mongo::mr::_safeCount(mongo::OperationContext*, mongo::DBDirectClient&amp;amp;, std::__cxx11::basic_string&amp;lt;char, std::char_traits&amp;lt;char&amp;gt;, std::allocator&amp;lt;char&amp;gt; &amp;gt; const&amp;amp;, mongo::BSONObj const&amp;amp;, int, int, int) ()&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; [2016/05/26 14:43:07.504] #8  0x0000000000c31ff4 in mongo::mr::State::postProcessCollectionNonAtomic(mongo::OperationContext*, mongo::CurOp*, mongo::ProgressMeterHolder&amp;amp;) ()&lt;/span&gt;&lt;/pre&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; [2016/05/26 14:43:07.504] #9  0x0000000000c32d7e in mongo::mr::State::postProcessCollection(mongo::OperationContext*, mongo::CurOp*, mongo::ProgressMeterHolder&amp;amp;) ()&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; [2016/05/26 14:43:07.504] #10 0x0000000000c3e724 in mongo::mr::MapReduceFinishCommand::run(mongo::OperationContext*, std::__cxx11::basic_string&amp;lt;char, std::char_traits&amp;lt;char&amp;gt;, std::allocator&amp;lt;char&amp;gt; &amp;gt; const&amp;amp;, mongo::BSONObj&amp;amp;, int, std::__cxx11::basic_string&amp;lt;char, std::char_traits&amp;lt;char&amp;gt;, std::allocator&amp;lt;char&amp;gt; &amp;gt;&amp;amp;, mongo::BSONObjBuilder&amp;amp;) ()&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; [2016/05/26 14:43:07.504] #11 0x0000000000cab70c in mongo::Command::run(mongo::OperationContext*, mongo::rpc::RequestInterface const&amp;amp;, mongo::rpc::ReplyBuilderInterface*) ()&lt;/span&gt;&lt;/pre&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; [2016/05/26 14:43:07.504] #12 0x0000000000cac8ea in mongo::Command::execCommand(mongo::OperationContext*, mongo::Command*, mongo::rpc::RequestInterface const&amp;amp;, mongo::rpc::ReplyBuilderInterface*) ()&lt;/span&gt;&lt;/pre&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; [2016/05/26 14:43:07.505] #13 0x0000000001129ba6 in mongo::runCommands(mongo::OperationContext*, mongo::rpc::RequestInterface const&amp;amp;, mongo::rpc::ReplyBuilderInterface*) ()&lt;/span&gt;&lt;/pre&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; [2016/05/26 14:43:07.505] #14 0x0000000000dd3b65 in mongo::assembleResponse(mongo::OperationContext*, mongo::Message&amp;amp;, mongo::DbResponse&amp;amp;, mongo::HostAndPort const&amp;amp;) ()&lt;/span&gt;&lt;/pre&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; [2016/05/26 14:43:07.505] #15 0x0000000000a4346a in mongo::MyMessageHandler::process(mongo::Message&amp;amp;, mongo::AbstractMessagingPort*) ()&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; [2016/05/26 14:43:07.505] #16 0x00000000014beb03 in mongo::PortMessageServer::handleIncomingMsg(void*)&lt;/span&gt;&lt;/pre&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; [2016/05/26 14:43:07.505]     ()&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; [2016/05/26 14:43:07.505] #17 0x00002b142257c83d in start_thread () from /lib64/libpthread.so.0&lt;/span&gt;&lt;/pre&gt;
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&lt;p/&gt;</comment>
                    </comments>
                <issuelinks>
                            <issuelinktype id="10012">
                    <name>Related</name>
                                            <outwardlinks description="related to">
                                        <issuelink>
            <issuekey id="332668">SERVER-27097</issuekey>
        </issuelink>
                            </outwardlinks>
                                                        </issuelinktype>
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