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<channel>
    <title>MongoDB Jira</title>
    <link>https://jira.mongodb.org</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>9.7.1</version>
        <build-number>970001</build-number>
        <build-date>13-04-2023</build-date>
    </build-info>


<item>
            <title>[SERVER-26878] Mongod servers become very slow, seems replication thread issue</title>
                <link>https://jira.mongodb.org/browse/SERVER-26878</link>
                <project id="10000" key="SERVER">Core Server</project>
                    <description>&lt;p&gt;Hi,&lt;/p&gt;

&lt;p&gt;We are using mongod 3.0.12 replica-set cluster, and was working fine for months. But suddenly it become very slow.&lt;br/&gt;
This happens for ~30-35 min. and after that it again become normal.&lt;/p&gt;

&lt;p&gt;When we checked the logs, we find replication threads (oplog threads), started exactly that time when the issue starts and when those threads killed, the issue resolved automatically.&lt;/p&gt;

&lt;p&gt;Further, we have checked with AWS, and there is not network issue from there end and there is no slave lag during that time.&lt;/p&gt;


&lt;p&gt;mongod logs, having error:&lt;/p&gt;

&lt;p&gt;Primary:&lt;/p&gt;
&lt;p/&gt;
&lt;div id=&quot;syntaxplugin&quot; class=&quot;syntaxplugin&quot; style=&quot;border: 1px dashed #bbb; border-radius: 5px !important; overflow: auto; max-height: 30em;&quot;&gt;
&lt;table cellspacing=&quot;0&quot; cellpadding=&quot;0&quot; border=&quot;0&quot; width=&quot;100%&quot; style=&quot;font-size: 1em; line-height: 1.4em !important; font-weight: normal; font-style: normal; color: black;&quot;&gt;
		&lt;tbody &gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;  margin-top: 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2016-10-27T21:24:25.567+0530 I COMMAND  [conn1271549] query local.oplog.rs query: { ts: { $gte: Timestamp 1477581440000|15 } } planSummary: COLLSCAN cursorid:15062548466 ntoreturn:0 ntoskip:0 nscanned:0 nscannedObjects:34674009 keyUpdates:0 writeConflicts:0 numYields:272282 nreturned:101 reslen:35279 locks:{ Global: { acquireCount: { r: 544566 } }, Database: { acquireCount: { r: 272283 } }, oplog: { acquireCount: { r: 272283 } } } 2168613ms&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2016-10-27T21:24:25.567+0530 I NETWORK  [conn1271549] SocketException handling request, closing client connection: 9001 socket exception [SEND_ERROR] server [10.14.2.48:47400] &lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2016-10-27T21:24:25.570+0530 I COMMAND  [conn1271553] query local.oplog.rs query: { ts: { $gte: Timestamp 1477581440000|15 } } planSummary: COLLSCAN cursorid:14898865683 ntoreturn:0 ntoskip:0 nscanned:0 nscannedObjects:34674214 keyUpdates:0 writeConflicts:0 numYields:272332 nreturned:101 reslen:35279 locks:{ Global: { acquireCount: { r: 544666 } }, Database: { acquireCount: { r: 272333 } }, oplog: { acquireCount: { r: 272333 } } } 2176869ms&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2016-10-27T21:24:25.570+0530 I NETWORK  [conn1271553] SocketException handling request, closing client connection: 9001 socket exception [SEND_ERROR] server [10.14.17.163:38129] &lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2016-10-27T21:24:25.580+0530 I COMMAND  [conn1271910] query local.oplog.rs query: { ts: { $gte: Timestamp 1477581557000|5 } } planSummary: COLLSCAN cursorid:15114361808 ntoreturn:0 ntoskip:0 nscanned:0 nscannedObjects:34676032 keyUpdates:0 writeConflicts:0 numYields:272242 nreturned:101 reslen:45350 locks:{ Global: { acquireCount: { r: 544486 } }, Database: { acquireCount: { r: 272243 } }, oplog: { acquireCount: { r: 272243 } } } 1988208ms&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2016-10-27T21:24:25.580+0530 I NETWORK  [conn1271910] SocketException handling request, closing client connection: 9001 socket exception [SEND_ERROR] server [10.14.2.48:47461] &lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2016-10-27T21:24:25.581+0530 I COMMAND  [conn1271921] query local.oplog.rs query: { ts: { $gte: Timestamp 1477581557000|5 } } planSummary: COLLSCAN cursorid:16726213770 ntoreturn:0 ntoskip:0 nscanned:0 nscannedObjects:34675967 keyUpdates:0 writeConflicts:0 numYields:272287 nreturned:101 reslen:45350 locks:{ Global: { acquireCount: { r: 544576 } }, Database: { acquireCount: { r: 272288 } }, oplog: { acquireCount: { r: 272288 } } } 1917728ms&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2016-10-27T21:24:25.581+0530 I NETWORK  [conn1271921] SocketException handling request, closing client connection: 9001 socket exception [SEND_ERROR] server [10.14.2.48:47485] &lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2016-10-27T21:24:25.583+0530 I COMMAND  [conn1271914] query local.oplog.rs query: { ts: { $gte: Timestamp 1477581643000|3 } } planSummary: COLLSCAN cursorid:12954518601 ntoreturn:0 ntoskip:0 nscanned:0 nscannedObjects:34677296 keyUpdates:0 writeConflicts:0 numYields:272297 nreturned:101 reslen:57683 locks:{ Global: { acquireCount: { r: 544596 } }, Database: { acquireCount: { r: 272298 } }, oplog: { acquireCount: { r: 272298 } } } 1949781ms&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2016-10-27T21:24:25.583+0530 I COMMAND  [conn1271919] query local.oplog.rs query: { ts: { $gte: Timestamp 1477581643000|3 } } planSummary: COLLSCAN cursorid:13575995616 ntoreturn:0 ntoskip:0 nscanned:0 nscannedObjects:34677259 keyUpdates:0 writeConflicts:0 numYields:272281 nreturned:101 reslen:57683 locks:{ Global: { acquireCount: { r: 544564 } }, Database: { acquireCount: { r: 272282 } }, oplog: { acquireCount: { r: 272282 } } } 1919829ms&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2016-10-27T21:24:25.583+0530 I NETWORK  [conn1271919] SocketException handling request, closing client connection: 9001 socket exception [SEND_ERROR] server [10.14.17.163:38206] &lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   margin-bottom: 10px;  width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2016-10-27T21:24:25.583+0530 I NETWORK  [conn1271914] SocketException handling request, closing client connection: 9001 socket exception [SEND_ERROR] server [10.14.17.163:38196] &lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
			&lt;/tbody&gt;
&lt;/table&gt;
&lt;/div&gt;
&lt;p/&gt;

&lt;p&gt;Secondary:&lt;/p&gt;
&lt;p/&gt;
&lt;div id=&quot;syntaxplugin&quot; class=&quot;syntaxplugin&quot; style=&quot;border: 1px dashed #bbb; border-radius: 5px !important; overflow: auto; max-height: 30em;&quot;&gt;
&lt;table cellspacing=&quot;0&quot; cellpadding=&quot;0&quot; border=&quot;0&quot; width=&quot;100%&quot; style=&quot;font-size: 1em; line-height: 1.4em !important; font-weight: normal; font-style: normal; color: black;&quot;&gt;
		&lt;tbody &gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;  margin-top: 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2016-10-27T21:23:00.896+0530 I NETWORK  [initandlisten] connection accepted from 10.14.4.176:57444 #130402 (208 connections now open)&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2016-10-27T21:23:12.314+0530 I NETWORK  [rsBackgroundSync] Socket recv() timeout  10.14.4.176:27012&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2016-10-27T21:23:12.314+0530 I NETWORK  [rsBackgroundSync] SocketException: remote: 10.14.4.176:27012 error: 9001 socket exception [RECV_TIMEOUT] server [10.14.4.176:27012] &lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2016-10-27T21:23:12.314+0530 E REPL     [rsBackgroundSync] sync producer problem: 10278 dbclient error communicating with server: 10.14.4.176:27012&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2016-10-27T21:23:12.314+0530 I -        [rsBackgroundSync] caught exception (socket exception [FAILED_STATE] for 10.14.4.176:27012 (10.14.4.176) failed) in destructor (kill)&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   margin-bottom: 10px;  width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2016-10-27T21:23:12.314+0530 I REPL     [ReplicationExecutor] syncing from: 10.14.4.176:27012&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
			&lt;/tbody&gt;
&lt;/table&gt;
&lt;/div&gt;
&lt;p/&gt;
&lt;p&gt;Please let me know if you need anything else.&lt;/p&gt;</description>
                <environment>mongo 3.0.12 replica set on aws ec2 instances. OS : ubuntu 14.04</environment>
        <key id="328805">SERVER-26878</key>
            <summary>Mongod servers become very slow, seems replication thread issue</summary>
                <type id="1" iconUrl="https://jira.mongodb.org/secure/viewavatar?size=xsmall&amp;avatarId=14703&amp;avatarType=issuetype">Bug</type>
                                            <priority id="3" iconUrl="https://jira.mongodb.org/images/icons/priorities/major.svg">Major - P3</priority>
                        <status id="6" iconUrl="https://jira.mongodb.org/images/icons/statuses/closed.png" description="The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.">Closed</status>
                    <statusCategory id="3" key="done" colorName="success"/>
                                    <resolution id="4">Incomplete</resolution>
                                        <assignee username="kelsey.schubert@mongodb.com">Kelsey Schubert</assignee>
                                    <reporter username="rakesh.mib.j@gmail.com">Rakesh Kumar</reporter>
                        <labels>
                            <label>query</label>
                            <label>replicaset</label>
                    </labels>
                <created>Wed, 2 Nov 2016 16:07:25 +0000</created>
                <updated>Fri, 6 Jan 2017 19:21:12 +0000</updated>
                            <resolved>Fri, 6 Jan 2017 19:21:12 +0000</resolved>
                                    <version>3.0.12</version>
                                                    <component>Performance</component>
                    <component>Replication</component>
                    <component>WiredTiger</component>
                                        <votes>1</votes>
                                    <watches>5</watches>
                                                                                                                <comments>
                            <comment id="1471442" author="thomas.schubert" created="Fri, 6 Jan 2017 19:21:12 +0000"  >&lt;p&gt;Hi &lt;a href=&quot;https://jira.mongodb.org/secure/ViewProfile.jspa?name=rakesh.kumar&quot; class=&quot;user-hover&quot; rel=&quot;rakesh.kumar&quot;&gt;rakesh.kumar&lt;/a&gt;,&lt;/p&gt;

&lt;p&gt;We haven&#8217;t heard back from you for some time, so I&#8217;m going to mark this ticket as resolved. If this is still an issue for you, please provide additional information and we will reopen the ticket.&lt;/p&gt;

&lt;p&gt;Regards,&lt;br/&gt;
Thomas&lt;/p&gt;</comment>
                            <comment id="1448640" author="thomas.schubert" created="Sun, 4 Dec 2016 14:49:42 +0000"  >&lt;p&gt;Hi &lt;a href=&quot;https://jira.mongodb.org/secure/ViewProfile.jspa?name=rakesh.mib.j%40gmail.com&quot; class=&quot;user-hover&quot; rel=&quot;rakesh.mib.j@gmail.com&quot;&gt;rakesh.mib.j@gmail.com&lt;/a&gt;, &lt;/p&gt;

&lt;p&gt;We still need additional information to diagnose the problem. If this is still an issue for you, would you please answer my previous questions?&lt;/p&gt;

&lt;p&gt;Thank you,&lt;br/&gt;
Thomas&lt;/p&gt;</comment>
                            <comment id="1437937" author="thomas.schubert" created="Fri, 18 Nov 2016 19:55:44 +0000"  >&lt;p&gt;Hi &lt;a href=&quot;https://jira.mongodb.org/secure/ViewProfile.jspa?name=rakesh.mib.j%40gmail.com&quot; class=&quot;user-hover&quot; rel=&quot;rakesh.mib.j@gmail.com&quot;&gt;rakesh.mib.j@gmail.com&lt;/a&gt;,&lt;/p&gt;

&lt;p&gt;Sorry for the delay responding. To help us continue to investigate this issue, would you please upload the surrounding logs for both the primary and secondary?&lt;/p&gt;

&lt;p&gt;In addition, I have a few questions to better understand what is going on:&lt;/p&gt;
&lt;ol&gt;
	&lt;li&gt;Would you please clarify how the threads were killed?&lt;/li&gt;
	&lt;li&gt;Would you clarify how the primary is affected during the slow down?&lt;/li&gt;
	&lt;li&gt;Would you clarify how the secondary is affected during the slow down?&lt;/li&gt;
	&lt;li&gt;How frequently have you experienced this issue? Does it correlate to any particular time or events?&lt;/li&gt;
&lt;/ol&gt;


&lt;p&gt;Thank you,&lt;br/&gt;
Thomas&lt;/p&gt;</comment>
                    </comments>
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