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    <title>MongoDB Jira</title>
    <link>https://jira.mongodb.org</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>9.7.1</version>
        <build-number>970001</build-number>
        <build-date>13-04-2023</build-date>
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<item>
            <title>[SERVER-28416] Handle GDB error in hang_analyzer.py mongodb-uniqstack module</title>
                <link>https://jira.mongodb.org/browse/SERVER-28416</link>
                <project id="10000" key="SERVER">Core Server</project>
                    <description>&lt;p&gt;The mongodb-uniqstack module goes through each thread and frame to detect unique or duplicate threads in a process. On the s390x platform it can error, which terminates the module, producing no backtrace output. Partial output is preferable to none, so the GDB error should be trapped and not raised.&lt;/p&gt;

&lt;p/&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;  margin-top: 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;            try:&lt;/span&gt;&lt;/pre&gt;
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				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;                thread_info[&apos;frames&apos;] = gdb.execute(arg, to_string=True).rstrip()&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;            except gdb.error as err:&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   margin-bottom: 10px;  width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;                raise gdb.GdbError(&quot;{} {}&quot;.format(thread_info[&apos;header&apos;], err))&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
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&lt;p/&gt;</description>
                <environment></environment>
        <key id="366715">SERVER-28416</key>
            <summary>Handle GDB error in hang_analyzer.py mongodb-uniqstack module</summary>
                <type id="3" iconUrl="https://jira.mongodb.org/secure/viewavatar?size=xsmall&amp;avatarId=14718&amp;avatarType=issuetype">Task</type>
                                            <priority id="3" iconUrl="https://jira.mongodb.org/images/icons/priorities/major.svg">Major - P3</priority>
                        <status id="6" iconUrl="https://jira.mongodb.org/images/icons/statuses/closed.png" description="The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.">Closed</status>
                    <statusCategory id="3" key="done" colorName="success"/>
                                    <resolution id="9">Done</resolution>
                                        <assignee username="jonathan.abrahams">Jonathan Abrahams</assignee>
                                    <reporter username="jonathan.abrahams">Jonathan Abrahams</reporter>
                        <labels>
                            <label>bkp</label>
                    </labels>
                <created>Tue, 21 Mar 2017 19:10:10 +0000</created>
                <updated>Wed, 6 Dec 2017 21:13:55 +0000</updated>
                            <resolved>Thu, 30 Mar 2017 12:57:24 +0000</resolved>
                                                    <fixVersion>3.4.5</fixVersion>
                    <fixVersion>3.5.6</fixVersion>
                                    <component>Testing Infrastructure</component>
                                        <votes>0</votes>
                                    <watches>3</watches>
                                                                                                                <comments>
                            <comment id="1562842" author="xgen-internal-githook" created="Tue, 2 May 2017 19:48:53 +0000"  >&lt;p&gt;Author:&lt;/p&gt;
{u&apos;username&apos;: u&apos;hptabster&apos;, u&apos;name&apos;: u&apos;Jonathan Abrahams&apos;, u&apos;email&apos;: u&apos;jonathan@mongodb.com&apos;}
&lt;p&gt;Message: &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-28416&quot; title=&quot;Handle GDB error in hang_analyzer.py mongodb-uniqstack module&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-28416&quot;&gt;&lt;del&gt;SERVER-28416&lt;/del&gt;&lt;/a&gt; Hang analyzer GDB on ARM can run &quot;thread apply all bt&quot;&lt;/p&gt;

&lt;p&gt;(cherry picked from commit 7677a8aa544a5df51c2bd45f6859cd3b97459108)&lt;br/&gt;
Branch: v3.4&lt;br/&gt;
&lt;a href=&quot;https://github.com/mongodb/mongo/commit/13e346ae91c38f9e378d03de855859b1e3548db5&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;https://github.com/mongodb/mongo/commit/13e346ae91c38f9e378d03de855859b1e3548db5&lt;/a&gt;&lt;/p&gt;</comment>
                            <comment id="1562841" author="xgen-internal-githook" created="Tue, 2 May 2017 19:48:52 +0000"  >&lt;p&gt;Author:&lt;/p&gt;
{u&apos;username&apos;: u&apos;hptabster&apos;, u&apos;name&apos;: u&apos;Jonathan Abrahams&apos;, u&apos;email&apos;: u&apos;jonathan@mongodb.com&apos;}
&lt;p&gt;Message: &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-28416&quot; title=&quot;Handle GDB error in hang_analyzer.py mongodb-uniqstack module&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-28416&quot;&gt;&lt;del&gt;SERVER-28416&lt;/del&gt;&lt;/a&gt; Split mongo pretty printers into separate file&lt;/p&gt;

&lt;p&gt;(cherry picked from commit d6552eddacb8afd90bebf55d3cd98cb77f543655)&lt;br/&gt;
Branch: v3.4&lt;br/&gt;
&lt;a href=&quot;https://github.com/mongodb/mongo/commit/933c560188eeac4b9d5658f8ebc05310a3f972a0&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;https://github.com/mongodb/mongo/commit/933c560188eeac4b9d5658f8ebc05310a3f972a0&lt;/a&gt;&lt;/p&gt;</comment>
                            <comment id="1562840" author="xgen-internal-githook" created="Tue, 2 May 2017 19:48:51 +0000"  >&lt;p&gt;Author:&lt;/p&gt;
{u&apos;username&apos;: u&apos;hptabster&apos;, u&apos;name&apos;: u&apos;Jonathan Abrahams&apos;, u&apos;email&apos;: u&apos;jonathan@mongodb.com&apos;}
&lt;p&gt;Message: &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-28416&quot; title=&quot;Handle GDB error in hang_analyzer.py mongodb-uniqstack module&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-28416&quot;&gt;&lt;del&gt;SERVER-28416&lt;/del&gt;&lt;/a&gt; Fix BSONObj pretty printer used in hang_analyzer to support big and little endianness&lt;/p&gt;

&lt;p&gt;(cherry picked from commit 3412b99e9f81199a7265fd0483d9b01432dbe53b)&lt;br/&gt;
Branch: v3.4&lt;br/&gt;
&lt;a href=&quot;https://github.com/mongodb/mongo/commit/87dc6cc5870b8c098526b5bca02930c2c5b5ab86&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;https://github.com/mongodb/mongo/commit/87dc6cc5870b8c098526b5bca02930c2c5b5ab86&lt;/a&gt;&lt;/p&gt;</comment>
                            <comment id="1562839" author="xgen-internal-githook" created="Tue, 2 May 2017 19:48:50 +0000"  >&lt;p&gt;Author:&lt;/p&gt;
{u&apos;username&apos;: u&apos;hptabster&apos;, u&apos;name&apos;: u&apos;Jonathan Abrahams&apos;, u&apos;email&apos;: u&apos;jonathan@mongodb.com&apos;}
&lt;p&gt;Message: &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-28416&quot; title=&quot;Handle GDB error in hang_analyzer.py mongodb-uniqstack module&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-28416&quot;&gt;&lt;del&gt;SERVER-28416&lt;/del&gt;&lt;/a&gt; Continue on error in mongodb-uniqstack in hang_analyzer&lt;/p&gt;

&lt;p&gt;(cherry picked from commit e9e806ee1f03b8328bb689ac0ce66625d16a59ee)&lt;br/&gt;
Branch: v3.4&lt;br/&gt;
&lt;a href=&quot;https://github.com/mongodb/mongo/commit/03847eeb91b2bb2146af1bcd7efb21be026ee404&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;https://github.com/mongodb/mongo/commit/03847eeb91b2bb2146af1bcd7efb21be026ee404&lt;/a&gt;&lt;/p&gt;</comment>
                            <comment id="1536865" author="xgen-internal-githook" created="Thu, 30 Mar 2017 13:31:14 +0000"  >&lt;p&gt;Author:&lt;/p&gt;
{u&apos;username&apos;: u&apos;hptabster&apos;, u&apos;name&apos;: u&apos;Jonathan Abrahams&apos;, u&apos;email&apos;: u&apos;jonathan@mongodb.com&apos;}
&lt;p&gt;Message: &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-28416&quot; title=&quot;Handle GDB error in hang_analyzer.py mongodb-uniqstack module&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-28416&quot;&gt;&lt;del&gt;SERVER-28416&lt;/del&gt;&lt;/a&gt; Hang analyzer GDB on ARM can run &quot;thread apply all bt&quot;&lt;br/&gt;
Branch: master&lt;br/&gt;
&lt;a href=&quot;https://github.com/mongodb/mongo/commit/7677a8aa544a5df51c2bd45f6859cd3b97459108&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;https://github.com/mongodb/mongo/commit/7677a8aa544a5df51c2bd45f6859cd3b97459108&lt;/a&gt;&lt;/p&gt;</comment>
                            <comment id="1536826" author="xgen-internal-githook" created="Thu, 30 Mar 2017 12:57:12 +0000"  >&lt;p&gt;Author:&lt;/p&gt;
{u&apos;username&apos;: u&apos;hptabster&apos;, u&apos;name&apos;: u&apos;Jonathan Abrahams&apos;, u&apos;email&apos;: u&apos;jonathan@mongodb.com&apos;}
&lt;p&gt;Message: &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-28416&quot; title=&quot;Handle GDB error in hang_analyzer.py mongodb-uniqstack module&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-28416&quot;&gt;&lt;del&gt;SERVER-28416&lt;/del&gt;&lt;/a&gt; Split mongo pretty printers into separate file&lt;br/&gt;
Branch: master&lt;br/&gt;
&lt;a href=&quot;https://github.com/mongodb/mongo/commit/d6552eddacb8afd90bebf55d3cd98cb77f543655&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;https://github.com/mongodb/mongo/commit/d6552eddacb8afd90bebf55d3cd98cb77f543655&lt;/a&gt;&lt;/p&gt;</comment>
                            <comment id="1536437" author="xgen-internal-githook" created="Wed, 29 Mar 2017 20:28:55 +0000"  >&lt;p&gt;Author:&lt;/p&gt;
{u&apos;username&apos;: u&apos;hptabster&apos;, u&apos;name&apos;: u&apos;Jonathan Abrahams&apos;, u&apos;email&apos;: u&apos;jonathan@mongodb.com&apos;}
&lt;p&gt;Message: &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-28416&quot; title=&quot;Handle GDB error in hang_analyzer.py mongodb-uniqstack module&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-28416&quot;&gt;&lt;del&gt;SERVER-28416&lt;/del&gt;&lt;/a&gt; Fix BSONObj pretty printer used in hang_analyzer to support big and little endianness&lt;br/&gt;
Branch: master&lt;br/&gt;
&lt;a href=&quot;https://github.com/mongodb/mongo/commit/3412b99e9f81199a7265fd0483d9b01432dbe53b&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;https://github.com/mongodb/mongo/commit/3412b99e9f81199a7265fd0483d9b01432dbe53b&lt;/a&gt;&lt;/p&gt;</comment>
                            <comment id="1535812" author="xgen-internal-githook" created="Wed, 29 Mar 2017 12:48:32 +0000"  >&lt;p&gt;Author:&lt;/p&gt;
{u&apos;username&apos;: u&apos;hptabster&apos;, u&apos;name&apos;: u&apos;Jonathan Abrahams&apos;, u&apos;email&apos;: u&apos;jonathan@mongodb.com&apos;}
&lt;p&gt;Message: &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-28416&quot; title=&quot;Handle GDB error in hang_analyzer.py mongodb-uniqstack module&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-28416&quot;&gt;&lt;del&gt;SERVER-28416&lt;/del&gt;&lt;/a&gt; Continue on error in mongodb-uniqstack in hang_analyzer&lt;br/&gt;
Branch: master&lt;br/&gt;
&lt;a href=&quot;https://github.com/mongodb/mongo/commit/e9e806ee1f03b8328bb689ac0ce66625d16a59ee&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;https://github.com/mongodb/mongo/commit/e9e806ee1f03b8328bb689ac0ce66625d16a59ee&lt;/a&gt;&lt;/p&gt;</comment>
                            <comment id="1533687" author="jonathan.abrahams" created="Mon, 27 Mar 2017 20:34:15 +0000"  >&lt;p&gt;The &lt;a href=&quot;https://github.com/mongodb/mongo/blob/master/buildscripts/gdb/mongo.py#L562&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;pretty_printer modules&lt;/a&gt; causes a hang in &lt;tt&gt;bt&lt;/tt&gt;. We will restructure the logic to split out the pretty_printers from mongo.py and not load them on this platform.&lt;/p&gt;</comment>
                            <comment id="1533569" author="max.hirschhorn@10gen.com" created="Mon, 27 Mar 2017 18:58:35 +0000"  >&lt;blockquote&gt;
&lt;p&gt;For now, we will execute a &lt;tt&gt;bt&lt;/tt&gt; on all threads, through the Python/GDB module before loading the mongo python modules.&lt;/p&gt;&lt;/blockquote&gt;

&lt;p&gt;&lt;a href=&quot;https://jira.mongodb.org/secure/ViewProfile.jspa?name=jonathan.abrahams&quot; class=&quot;user-hover&quot; rel=&quot;jonathan.abrahams&quot;&gt;jonathan.abrahams&lt;/a&gt;, is this not already covered by &lt;a href=&quot;https://github.com/mongodb/mongo/blob/65fa51f459d54f31fdb30d44d5c17c700b9ff4b2/buildscripts/hang_analyzer.py#L338-L346&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;writing the output of &lt;tt&gt;thread apply all bt&lt;/tt&gt; to an xx_raw_stacks.log file&lt;/a&gt; that was done as part of the changes in &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-27727&quot; title=&quot;Hide idle threads in hang_analyzer&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-27727&quot;&gt;&lt;del&gt;SERVER-27727&lt;/del&gt;&lt;/a&gt;? &lt;/p&gt;</comment>
                            <comment id="1533564" author="jonathan.abrahams" created="Mon, 27 Mar 2017 18:54:55 +0000"  >&lt;p&gt;Handling the GDB error will not solve the underlying problem that the &lt;tt&gt;bt&lt;/tt&gt; will hang after the python modules has been loaded.&lt;/p&gt;

&lt;p&gt;For now, we will execute a &lt;tt&gt;bt&lt;/tt&gt; on all threads, through the Python/GDB module before loading the mongo python modules.&lt;/p&gt;</comment>
                            <comment id="1533486" author="jonathan.abrahams" created="Mon, 27 Mar 2017 17:59:20 +0000"  >&lt;p&gt;Handling the GDB error will not solve the underlying problem that the &lt;tt&gt;bt&lt;/tt&gt; will hang after the python modules have been loaded. An alternate would be to have the mongodb-uniqstack module write it&apos;s own backtrace instead of relying on a call to &lt;tt&gt;gdb.execute&lt;/tt&gt;.&lt;/p&gt;</comment>
                    </comments>
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