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<channel>
    <title>MongoDB Jira</title>
    <link>https://jira.mongodb.org</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>9.7.1</version>
        <build-number>970001</build-number>
        <build-date>13-04-2023</build-date>
    </build-info>


<item>
            <title>[SERVER-28601] Mongo start aborting after fassert() failure</title>
                <link>https://jira.mongodb.org/browse/SERVER-28601</link>
                <project id="10000" key="SERVER">Core Server</project>
                    <description>&lt;p/&gt;
&lt;div id=&quot;syntaxplugin&quot; class=&quot;syntaxplugin&quot; style=&quot;border: 1px dashed #bbb; border-radius: 5px !important; overflow: auto; max-height: 30em;&quot;&gt;
&lt;table cellspacing=&quot;0&quot; cellpadding=&quot;0&quot; border=&quot;0&quot; width=&quot;100%&quot; style=&quot;font-size: 1em; line-height: 1.4em !important; font-weight: normal; font-style: normal; color: black;&quot;&gt;
		&lt;tbody &gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;  margin-top: 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;Detected data files in /Volumes/SeagateBackupPlusDrive/Mongodb/mongodb created by the &apos;wiredTiger&apos; storage engine, so setting the active storage engine to &apos;wiredTiger&apos;.&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2017-04-04T00:00:51.812-0400 I STORAGE  [initandlisten] wiredtiger_open config: create,cache_size=9G,session_max=20000,eviction=(threads_max=4),config_base=false,statistics=(fast),log=(enabled=true,archive=true,path=journal,compressor=snappy),file_manager=(close_idle_time=100000),checkpoint=(wait=60,log_size=2GB),statistics_log=(wait=0),&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2017-04-04T00:00:51.859-0400 E STORAGE  [initandlisten] WiredTiger (-31802) [1491278451:859327][15050:0x7fff7d3d1310], connection: log file journal/WiredTigerLog.0000005020 corrupted: Bad magic number 0: WT_ERROR: non-specific WiredTiger error&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2017-04-04T00:00:51.859-0400 E STORAGE  [initandlisten] WiredTiger (-31804) [1491278451:859385][15050:0x7fff7d3d1310], connection: the process must exit and restart: WT_PANIC: WiredTiger library panic&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2017-04-04T00:00:51.859-0400 I -        [initandlisten] Fatal Assertion 28558&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2017-04-04T00:00:51.859-0400 I -        [initandlisten] &lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&amp;nbsp;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;***aborting after fassert() failure&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&amp;nbsp;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&amp;nbsp;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2017-04-04T00:00:51.864-0400 F -        [initandlisten] Got signal: 6 (Abort trap: 6).&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&amp;nbsp;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   margin-bottom: 10px;  width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;----- BEGIN BACKTRACE -----&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
			&lt;/tbody&gt;
&lt;/table&gt;
&lt;/div&gt;
&lt;p/&gt;</description>
                <environment></environment>
        <key id="370607">SERVER-28601</key>
            <summary>Mongo start aborting after fassert() failure</summary>
                <type id="1" iconUrl="https://jira.mongodb.org/secure/viewavatar?size=xsmall&amp;avatarId=14703&amp;avatarType=issuetype">Bug</type>
                                            <priority id="3" iconUrl="https://jira.mongodb.org/images/icons/priorities/major.svg">Major - P3</priority>
                        <status id="6" iconUrl="https://jira.mongodb.org/images/icons/statuses/closed.png" description="The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.">Closed</status>
                    <statusCategory id="3" key="done" colorName="success"/>
                                    <resolution id="9">Done</resolution>
                                        <assignee username="kelsey.schubert@mongodb.com">Kelsey Schubert</assignee>
                                    <reporter username="Sasanka_uppu">Sasanka Uppu [X]</reporter>
                        <labels>
                    </labels>
                <created>Tue, 4 Apr 2017 04:21:02 +0000</created>
                <updated>Wed, 31 May 2017 21:23:30 +0000</updated>
                            <resolved>Tue, 4 Apr 2017 17:09:54 +0000</resolved>
                                    <version>3.2.4</version>
                                                    <component>WiredTiger</component>
                                        <votes>0</votes>
                                    <watches>6</watches>
                                                                                                                <comments>
                            <comment id="1540606" author="thomas.schubert" created="Tue, 4 Apr 2017 17:28:34 +0000"  >&lt;p&gt;Hi &lt;a href=&quot;https://jira.mongodb.org/secure/ViewProfile.jspa?name=Sasanka_uppu&quot; class=&quot;user-hover&quot; rel=&quot;Sasanka_uppu&quot;&gt;Sasanka_uppu&lt;/a&gt;,&lt;/p&gt;

&lt;p&gt;I&apos;m glad you were able to restart mongod successfully. Please note that SERVER project is for reporting bugs or feature suggestions for the MongoDB server. For MongoDB-related support discussion please post on the &lt;a href=&quot;http://groups.google.com/group/mongodb-user&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;mongodb-user group&lt;/a&gt; or &lt;a href=&quot;http://stackoverflow.com/questions/tagged/mongodb&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;Stack Overflow with the &lt;tt&gt;mongodb&lt;/tt&gt; tag&lt;/a&gt;. A question like this involving more discussion would be best posted on the mongodb-users group.&lt;/p&gt;

&lt;p&gt;Kind regards,&lt;br/&gt;
Thomas&lt;/p&gt;</comment>
                            <comment id="1540585" author="sasanka_uppu" created="Tue, 4 Apr 2017 17:19:06 +0000"  >&lt;p&gt;Hiii,&lt;br/&gt;
I removed the WiredTigerLog files and it works!!! Thanks a lot..... &lt;br/&gt;
A small question Is it a best practice though to run the db like this (through external hard drive)? and also any idea how to prevent such failures in future?&lt;/p&gt;</comment>
                            <comment id="1540568" author="thomas.schubert" created="Tue, 4 Apr 2017 17:09:44 +0000"  >&lt;p&gt;Hi &lt;a href=&quot;https://jira.mongodb.org/secure/ViewProfile.jspa?name=Sasanka_uppu&quot; class=&quot;user-hover&quot; rel=&quot;Sasanka_uppu&quot;&gt;Sasanka_uppu&lt;/a&gt;,&lt;/p&gt;

&lt;p&gt;Thanks for the additional information. Removing the drive as you describe would explain this type of disk corruption. Unfortunately, there is little MongoDB can do to in these circumstances. To successfully restart mongod, please remove &lt;tt&gt;WiredTigerLog&lt;/tt&gt; files greater than or equal to 5020. After removing these files, the &lt;tt&gt;dbpath&lt;/tt&gt; should be back in a consistent state assuming no other corruption has occurred. This process will allow mongod to recover everything up to 5019. Please note that the more recent log files may have been written as part of the restart attempts, but if they contain real data, it would be lost.&lt;/p&gt;

&lt;p&gt;Kind regards,&lt;br/&gt;
Thomas&lt;/p&gt;</comment>
                            <comment id="1540533" author="sasanka_uppu" created="Tue, 4 Apr 2017 16:38:51 +0000"  >&lt;p&gt;Hi Thanks for the quick response.. &lt;br/&gt;
1) Here is my Output for ls -l command in journal directory:&lt;br/&gt;
total 5533304&lt;br/&gt;
&lt;del&gt;rw-r&lt;/del&gt;&lt;del&gt;r&lt;/del&gt;-@ 1 username  staff  104857728 Apr  3 19:03 WiredTigerLog.0000005005&lt;br/&gt;
&lt;del&gt;rw-r&lt;/del&gt;&lt;del&gt;r&lt;/del&gt;-@ 1 username  staff  104857728 Apr  3 23:06 WiredTigerLog.0000005006&lt;br/&gt;
&lt;del&gt;rw-r&lt;/del&gt;&lt;del&gt;r&lt;/del&gt;-@ 1 username  staff  104857728 Apr  3 23:06 WiredTigerLog.0000005007&lt;br/&gt;
&lt;del&gt;rw-r&lt;/del&gt;&lt;del&gt;r&lt;/del&gt;-@ 1 username  staff  104857728 Apr  3 23:07 WiredTigerLog.0000005008&lt;br/&gt;
&lt;del&gt;rw-r&lt;/del&gt;&lt;del&gt;r&lt;/del&gt;-@ 1 username  staff  104857728 Apr  3 23:08 WiredTigerLog.0000005009&lt;br/&gt;
&lt;del&gt;rw-r&lt;/del&gt;&lt;del&gt;r&lt;/del&gt;-@ 1 username  staff  104857728 Apr  3 23:12 WiredTigerLog.0000005010&lt;br/&gt;
&lt;del&gt;rw-r&lt;/del&gt;&lt;del&gt;r&lt;/del&gt;-@ 1 username  staff  104857728 Apr  3 23:13 WiredTigerLog.0000005011&lt;br/&gt;
&lt;del&gt;rw-r&lt;/del&gt;&lt;del&gt;r&lt;/del&gt;-@ 1 username  staff  104857728 Apr  3 23:13 WiredTigerLog.0000005012&lt;br/&gt;
&lt;del&gt;rw-r&lt;/del&gt;&lt;del&gt;r&lt;/del&gt;-@ 1 username  staff  104857728 Apr  3 23:16 WiredTigerLog.0000005013&lt;br/&gt;
&lt;del&gt;rw-r&lt;/del&gt;&lt;del&gt;r&lt;/del&gt;-@ 1 username  staff  104857728 Apr  3 23:22 WiredTigerLog.0000005014&lt;br/&gt;
&lt;del&gt;rw-r&lt;/del&gt;&lt;del&gt;r&lt;/del&gt;-@ 1 username  staff  104857600 Apr  3 23:24 WiredTigerLog.0000005015&lt;br/&gt;
&lt;del&gt;rw-r&lt;/del&gt;&lt;del&gt;r&lt;/del&gt;-@ 1 username  staff  104857600 Apr  3 23:30 WiredTigerLog.0000005016&lt;br/&gt;
&lt;del&gt;rw-r&lt;/del&gt;&lt;del&gt;r&lt;/del&gt;-@ 1 username  staff  104857600 Apr  3 23:46 WiredTigerLog.0000005017&lt;br/&gt;
&lt;del&gt;rw-r&lt;/del&gt;&lt;del&gt;r&lt;/del&gt;-@ 1 username  staff  104857600 Apr  3 23:50 WiredTigerLog.0000005018&lt;br/&gt;
&lt;del&gt;rw-r&lt;/del&gt;&lt;del&gt;r&lt;/del&gt;-@ 1 username  staff  104857600 Apr  3 23:55 WiredTigerLog.0000005019&lt;br/&gt;
&lt;del&gt;rw-r&lt;/del&gt;&lt;del&gt;r&lt;/del&gt;-@ 1 username  staff  104857728 Apr  4 00:00 WiredTigerLog.0000005020&lt;br/&gt;
&lt;del&gt;rw-r&lt;/del&gt;&lt;del&gt;r&lt;/del&gt;-@ 1 username  staff  104857728 Apr  4 00:18 WiredTigerLog.0000005021&lt;br/&gt;
&lt;del&gt;rw-r&lt;/del&gt;&lt;del&gt;r&lt;/del&gt;-@ 1 username  staff  104857728 Apr  4 00:26 WiredTigerLog.0000005022&lt;br/&gt;
&lt;del&gt;rw-r&lt;/del&gt;&lt;del&gt;r&lt;/del&gt;-@ 1 username  staff  104857728 Apr  4 00:26 WiredTigerLog.0000005023&lt;br/&gt;
&lt;del&gt;rw-r&lt;/del&gt;&lt;del&gt;r&lt;/del&gt;-@ 1 username  staff  104857728 Apr  4 00:26 WiredTigerLog.0000005024&lt;br/&gt;
&lt;del&gt;rw-r&lt;/del&gt;&lt;del&gt;r&lt;/del&gt;-@ 1 username  staff  104857728 Apr  4 00:36 WiredTigerLog.0000005025&lt;br/&gt;
&lt;del&gt;rw-r&lt;/del&gt;&lt;del&gt;r&lt;/del&gt;-@ 1 username  staff  104857728 Apr  4 00:36 WiredTigerLog.0000005026&lt;br/&gt;
&lt;del&gt;rw-r&lt;/del&gt;&lt;del&gt;r&lt;/del&gt;-@ 1 username  staff  104857728 Apr  4 00:36 WiredTigerLog.0000005027&lt;br/&gt;
&lt;del&gt;rw-r&lt;/del&gt;&lt;del&gt;r&lt;/del&gt;-@ 1 username  staff  104857728 Apr  4 00:36 WiredTigerLog.0000005028&lt;br/&gt;
&lt;del&gt;rw-r&lt;/del&gt;&lt;del&gt;r&lt;/del&gt;-@ 1 username  staff  104857728 Apr  4 00:38 WiredTigerLog.0000005029&lt;br/&gt;
&lt;del&gt;rw-r&lt;/del&gt;&lt;del&gt;r&lt;/del&gt;-@ 1 username  staff  104857728 Apr  4 00:38 WiredTigerLog.0000005030&lt;br/&gt;
&lt;del&gt;rw-r&lt;/del&gt;&lt;del&gt;r&lt;/del&gt;-@ 1 username  staff  104857728 Apr  4 00:39 WiredTigerLog.0000005031&lt;/p&gt;

&lt;p&gt;2) Yes I opened a connection in Pymongo (Python code) and removed the drive without closing the connection.&lt;/p&gt;

&lt;p&gt;Thanks!&lt;/p&gt;</comment>
                            <comment id="1540509" author="thomas.schubert" created="Tue, 4 Apr 2017 16:15:50 +0000"  >&lt;p&gt;Hi &lt;a href=&quot;https://jira.mongodb.org/secure/ViewProfile.jspa?name=Sasanka_uppu&quot; class=&quot;user-hover&quot; rel=&quot;Sasanka_uppu&quot;&gt;Sasanka_uppu&lt;/a&gt;,&lt;/p&gt;

&lt;p&gt;Thanks for reporting this behavior. It appears the &lt;tt&gt;WiredTigerLog.0000005020&lt;/tt&gt; file has been zeroed. I have a few questions to better understand what has happened.&lt;/p&gt;

&lt;ol&gt;
	&lt;li&gt;Would you please provide the output of &apos;ls -l&apos; against your journal directory?&lt;/li&gt;
	&lt;li&gt;Would you clarify under what circumstances the mongod went down prior to the error restarting? If I&apos;m understanding your last comment, the the external drive was removed while mongod was running. Is that correct?&lt;/li&gt;
&lt;/ol&gt;


&lt;p&gt;Thank you,&lt;br/&gt;
Thomas&lt;/p&gt;</comment>
                            <comment id="1540503" author="sasanka_uppu" created="Tue, 4 Apr 2017 16:12:34 +0000"  >&lt;p&gt;Just as a heads up I have been accessing the mongodb from pymongo and forgot to close the connection before removing the external drive in which db was present.. which possibly might have caused this&lt;/p&gt;</comment>
                            <comment id="1539987" author="sasanka_uppu" created="Tue, 4 Apr 2017 04:27:22 +0000"  >&lt;p&gt;Unfortunately doing mongodb --repair is also throwing the same error..&lt;/p&gt;</comment>
                            <comment id="1539986" author="sasanka_uppu" created="Tue, 4 Apr 2017 04:23:27 +0000"  >&lt;p&gt;I put my mongo data base in my external drive and explicitly give the db path with the command (sudo mongod --dbpath ***) whenever i use mongo...&lt;br/&gt;
Now I&apos;m facing issue mentioned above... Please Help!!&lt;/p&gt;</comment>
                    </comments>
                    <attachments>
                            <attachment id="153050" name="WiredTiger" size="49" author="Sasanka_uppu" created="Tue, 4 Apr 2017 04:20:43 +0000"/>
                            <attachment id="153049" name="WiredTiger.lock" size="21" author="Sasanka_uppu" created="Tue, 4 Apr 2017 04:20:43 +0000"/>
                            <attachment id="153048" name="WiredTiger.turtle" size="937" author="Sasanka_uppu" created="Tue, 4 Apr 2017 04:20:43 +0000"/>
                            <attachment id="153047" name="WiredTiger.wt" size="528384" author="Sasanka_uppu" created="Tue, 4 Apr 2017 04:20:43 +0000"/>
                            <attachment id="153046" name="WiredTigerLAS.wt" size="4096" author="Sasanka_uppu" created="Tue, 4 Apr 2017 04:20:43 +0000"/>
                            <attachment id="153053" name="WiredTigerLog.0000005020" size="104857728" author="Sasanka_uppu" created="Tue, 4 Apr 2017 04:31:05 +0000"/>
                            <attachment id="153052" name="sizeStorer.wt" size="61440" author="Sasanka_uppu" created="Tue, 4 Apr 2017 04:20:43 +0000"/>
                            <attachment id="153051" name="storage.bson" size="95" author="Sasanka_uppu" created="Tue, 4 Apr 2017 04:20:43 +0000"/>
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