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    <title>MongoDB Jira</title>
    <link>https://jira.mongodb.org</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>9.7.1</version>
        <build-number>970001</build-number>
        <build-date>13-04-2023</build-date>
    </build-info>


<item>
            <title>[SERVER-33641] Call checkOplogs when checkReplicatedDataHashes fails</title>
                <link>https://jira.mongodb.org/browse/SERVER-33641</link>
                <project id="10000" key="SERVER">Core Server</project>
                    <description>&lt;p&gt;We should do the following to improve the relevance of diagnostics we have in the face of data inconsistency issues:&lt;/p&gt;

&lt;ol&gt;
	&lt;li&gt;Update &lt;tt&gt;ReplSetTest#stopSet()&lt;/tt&gt; to call &lt;tt&gt;ReplSetTest#checkOplogs()&lt;/tt&gt; &lt;a href=&quot;https://github.com/mongodb/mongo/blob/r3.7.7/src/mongo/shell/replsettest.js#L2174-L2189&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;in addition to &lt;tt&gt;ReplSetTest#checkReplicatedDataHashes()&lt;/tt&gt;&lt;/a&gt;. Care should be taken to ensure that tests do not run significantly longer because they need to verify a large oplog when shutting down the replica set.&lt;/li&gt;
	&lt;li&gt;Update the &lt;tt&gt;PeriodicKillSecondaries&lt;/tt&gt; hook to run the &lt;tt&gt;CheckReplOplogs&lt;/tt&gt; hook &lt;a href=&quot;https://github.com/mongodb/mongo/blob/r3.7.7/buildscripts/resmokelib/testing/hooks/periodic_kill_secondaries.py#L137-L147&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;in addition to the &lt;tt&gt;CheckReplDBHash&lt;/tt&gt; and &lt;tt&gt;ValidateCollections&lt;/tt&gt; hooks&lt;/a&gt;.&lt;/li&gt;
&lt;/ol&gt;


&lt;h6&gt;&lt;a name=&quot;Originaldescription&quot;&gt;&lt;/a&gt;Original description&lt;/h6&gt;

&lt;p&gt;We now save all of the data files, but it would be great if the test could check the oplogs automatically and note any differences.&lt;/p&gt;</description>
                <environment></environment>
        <key id="504977">SERVER-33641</key>
            <summary>Call checkOplogs when checkReplicatedDataHashes fails</summary>
                <type id="4" iconUrl="https://jira.mongodb.org/secure/viewavatar?size=xsmall&amp;avatarId=14710&amp;avatarType=issuetype">Improvement</type>
                                            <priority id="3" iconUrl="https://jira.mongodb.org/images/icons/priorities/major.svg">Major - P3</priority>
                        <status id="6" iconUrl="https://jira.mongodb.org/images/icons/statuses/closed.png" description="The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.">Closed</status>
                    <statusCategory id="3" key="done" colorName="success"/>
                                    <resolution id="13201">Fixed</resolution>
                                        <assignee username="david.bradford@mongodb.com">David Bradford</assignee>
                                    <reporter username="judah.schvimer@mongodb.com">Judah Schvimer</reporter>
                        <labels>
                    </labels>
                <created>Fri, 2 Mar 2018 22:02:38 +0000</created>
                <updated>Sun, 29 Oct 2023 22:34:11 +0000</updated>
                            <resolved>Tue, 22 May 2018 21:10:03 +0000</resolved>
                                                    <fixVersion>4.0.0-rc1</fixVersion>
                                    <component>Replication</component>
                    <component>Testing Infrastructure</component>
                                        <votes>0</votes>
                                    <watches>6</watches>
                                                                                                                <comments>
                            <comment id="1898919" author="xgen-internal-githook" created="Tue, 22 May 2018 21:08:34 +0000"  >&lt;p&gt;Author:&lt;/p&gt;
{&apos;username&apos;: &apos;dbradf&apos;, &apos;name&apos;: &apos;David Bradford&apos;, &apos;email&apos;: &apos;david.bradford@mongodb.com&apos;}
&lt;p&gt;Message: &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-33641&quot; title=&quot;Call checkOplogs when checkReplicatedDataHashes fails&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-33641&quot;&gt;&lt;del&gt;SERVER-33641&lt;/del&gt;&lt;/a&gt;: Check oplogs in tests on stop repl set&lt;/p&gt;

&lt;p&gt;(cherry picked from commit 018f33cb0e0f64880295b6d910060365c117a835)&lt;br/&gt;
Branch: v4.0&lt;br/&gt;
&lt;a href=&quot;https://github.com/mongodb/mongo/commit/4f2b182876959f740ae257cf9394fbb091386720&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;https://github.com/mongodb/mongo/commit/4f2b182876959f740ae257cf9394fbb091386720&lt;/a&gt;&lt;/p&gt;</comment>
                            <comment id="1898913" author="xgen-internal-githook" created="Tue, 22 May 2018 21:04:15 +0000"  >&lt;p&gt;Author:&lt;/p&gt;
{&apos;username&apos;: &apos;dbradf&apos;, &apos;name&apos;: &apos;David Bradford&apos;, &apos;email&apos;: &apos;david.bradford@mongodb.com&apos;}
&lt;p&gt;Message: &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-33641&quot; title=&quot;Call checkOplogs when checkReplicatedDataHashes fails&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-33641&quot;&gt;&lt;del&gt;SERVER-33641&lt;/del&gt;&lt;/a&gt;: Check oplogs in tests on stop repl set&lt;br/&gt;
Branch: master&lt;br/&gt;
&lt;a href=&quot;https://github.com/mongodb/mongo/commit/018f33cb0e0f64880295b6d910060365c117a835&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;https://github.com/mongodb/mongo/commit/018f33cb0e0f64880295b6d910060365c117a835&lt;/a&gt;&lt;/p&gt;</comment>
                            <comment id="1871321" author="judah.schvimer" created="Mon, 23 Apr 2018 14:29:09 +0000"  >&lt;p&gt;We currently also do not check oplog consistency in the kill_secondaries passthrough or in ReplSetTest stopSet.&lt;/p&gt;</comment>
                            <comment id="1824542" author="judah.schvimer" created="Tue, 6 Mar 2018 15:55:43 +0000"  >&lt;p&gt;I agree it&apos;s less necessary, but it certainly would still be helpful to not have to download the logs and set up the cluster again and rerun the checks myself.&lt;/p&gt;</comment>
                            <comment id="1823957" author="max.hirschhorn@10gen.com" created="Tue, 6 Mar 2018 00:41:51 +0000"  >&lt;blockquote&gt;
&lt;p&gt;Yes that would be sufficient.&lt;/p&gt;

&lt;p&gt;Additionally, when checkReplicatedDataHashes fails, running validate and logging the output would be useful. Index corruption on the _id index can manifest as a DB Hash mismatch, which is misleading.&lt;/p&gt;&lt;/blockquote&gt;

&lt;p&gt;It sounds like maybe you really want to have a mode for running all of the data consistency checks and getting all of their output. Does this request become less relevant if we were to archive the data files any time &lt;tt&gt;ReplSetTest#checkOplogs()&lt;/tt&gt; or &lt;tt&gt;ReplSetTest#checkReplicatedDataHashes()&lt;/tt&gt; fails and not just when they are called by resmoke.py&apos;s &lt;tt&gt;CheckReplOplogs&lt;/tt&gt; and &lt;tt&gt;CheckReplDBHash&lt;/tt&gt; hooks, respectively? I imagine there&apos;s still some value to seeing the possibly multiple failure messages in the logs before downloading the data files.&lt;/p&gt;</comment>
                            <comment id="1823160" author="judah.schvimer" created="Mon, 5 Mar 2018 16:04:55 +0000"  >&lt;p&gt;Yes that would be sufficient.&lt;/p&gt;

&lt;p&gt;Additionally, when checkReplicatedDataHashes fails, running validate and logging the output would be useful. Index corruption on the _id index can manifest as a DB Hash mismatch, which is misleading. &lt;/p&gt;</comment>
                            <comment id="1821961" author="max.hirschhorn@10gen.com" created="Fri, 2 Mar 2018 22:33:05 +0000"  >&lt;p&gt;&lt;a href=&quot;https://jira.mongodb.org/secure/ViewProfile.jspa?name=judah.schvimer&quot; class=&quot;user-hover&quot; rel=&quot;judah.schvimer&quot;&gt;judah.schvimer&lt;/a&gt;, we currently &lt;a href=&quot;https://github.com/mongodb/mongo/blob/b1624b3fb1fe7eaf4554682d02c57abc519db819/buildscripts/resmokeconfig/suites/replica_sets_jscore_passthrough.yml#L24-L29&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;run the &lt;tt&gt;CheckReplOplogs&lt;/tt&gt; hook (which calls &lt;tt&gt;ReplSetTest#checkOplogs()&lt;/tt&gt; function) before running the &lt;tt&gt;CheckReplDBHash&lt;/tt&gt; hook (which calls &lt;tt&gt;ReplSetTest#checkReplicatedDataHashes()&lt;/tt&gt;)&lt;/a&gt; because of the thought that the oplogs much be consistent across nodes in order for there to be any chance for the data to be consistent across nodes. Should we instead change &lt;tt&gt;ReplSetTest#stopSet()&lt;/tt&gt; to call &lt;tt&gt;ReplSetTest#checkOplogs()&lt;/tt&gt; when the replica set is being terminated by the test before it calls &lt;tt&gt;ReplSetTest#checkReplicatedDataHashes()&lt;/tt&gt;?&lt;/p&gt;

&lt;p/&gt;
&lt;div id=&quot;syntaxplugin&quot; class=&quot;syntaxplugin&quot; style=&quot;border: 1px dashed #bbb; border-radius: 5px !important; overflow: auto; max-height: 30em;&quot;&gt;
&lt;table cellspacing=&quot;0&quot; cellpadding=&quot;0&quot; border=&quot;0&quot; width=&quot;100%&quot; style=&quot;font-size: 1em; line-height: 1.4em !important; font-weight: normal; font-style: normal; color: black;&quot;&gt;
		&lt;tbody &gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;  margin-top: 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;hooks:&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
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				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;# The CheckReplDBHash hook waits until all operations have replicated to and have been applied&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;# on the secondaries, so we run the ValidateCollections hook after it to ensure we&apos;re&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
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				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;# validating the entire contents of the collection.&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
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				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;- class: CheckPrimary&lt;/span&gt;&lt;/pre&gt;
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				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;- class: CheckReplOplogs&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
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				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;- class: CheckReplDBHash&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;- class: ValidateCollections&lt;/span&gt;&lt;/pre&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;- class: CleanEveryN&lt;/span&gt;&lt;/pre&gt;
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&lt;p/&gt;</comment>
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            <issuekey id="554488">SERVER-35403</issuekey>
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