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    <title>MongoDB Jira</title>
    <link>https://jira.mongodb.org</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>9.7.1</version>
        <build-number>970001</build-number>
        <build-date>13-04-2023</build-date>
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<item>
            <title>[SERVER-3825] Segmentation fault on CentOS 5.6</title>
                <link>https://jira.mongodb.org/browse/SERVER-3825</link>
                <project id="10000" key="SERVER">Core Server</project>
                    <description>&lt;p&gt;Made a clean install of mongodb 2.0.0 (e.g. removed all database files of an existing 1.8.3 installation prior try running the server). However the server instantly dies instantaneously&lt;/p&gt;

&lt;p&gt;Tue Sep 13 01:04:42 BackgroundJob starting: DataFileSync&lt;br/&gt;
Tue Sep 13 01:04:42 isInRangeTest passed&lt;br/&gt;
Tue Sep 13 01:04:42 shardKeyTest passed&lt;br/&gt;
Tue Sep 13 01:04:42 shardObjTest passed&lt;br/&gt;
Tue Sep 13 01:04:42 versionCmpTest passed&lt;br/&gt;
Tue Sep 13 01:04:42 versionArrayTest passed&lt;br/&gt;
Tue Sep 13 01:04:42 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; MongoDB starting : pid=30432 port=27017 dbpath=/var/mongodb 64-bit host=Jeeves&lt;br/&gt;
Tue Sep 13 01:04:42 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; db version v2.0.0, pdfile version 4.5&lt;br/&gt;
Tue Sep 13 01:04:42 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; git version: nogitversion&lt;br/&gt;
Tue Sep 13 01:04:42 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; build info: Linux Jeeves 2.6.18-238.19.1.el5 #1 SMP Fri Jul 15 07:31:24 EDT 2011 x86_64 BOOST_LIB_VERSION=1_33_1&lt;br/&gt;
Tue Sep 13 01:04:42 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; options: &lt;/p&gt;
{ bind_ip: &quot;127.0.0.1&quot;, config: &quot;/var/mongodb/mongod.conf&quot;, dbpath: &quot;/var/mongodb&quot;, fork: &quot;true&quot;, logappend: &quot;true&quot;, logpath: &quot;/var/log/mongodb/mongod.log&quot;, vvvv: true }
&lt;p&gt;Tue Sep 13 01:04:42 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; flushing directory /var/mongodb&lt;br/&gt;
Tue Sep 13 01:04:42 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; journal dir=/var/mongodb/journal&lt;br/&gt;
Tue Sep 13 01:04:42 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; recover : no journal files present, no recovery needed&lt;br/&gt;
Tue Sep 13 01:04:42 Invalid access at address: 0x10&lt;/p&gt;

&lt;p&gt;Tue Sep 13 01:04:42 Got signal: 11 (Segmentation fault).&lt;/p&gt;

&lt;p&gt;Tue Sep 13 01:04:42 Backtrace:&lt;br/&gt;
0xa58bf9 0xa591d0 0x3265a0eb10 0x72c971 0x738ebe 0x727baa 0xa5c8c9 0xa5d38a 0xa6546f 0x326461d994 0x4db589 &lt;br/&gt;
 mongod(_ZN5mongo10abruptQuitEi+0x399) &lt;span class=&quot;error&quot;&gt;&amp;#91;0xa58bf9&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(_ZN5mongo24abruptQuitWithAddrSignalEiP7siginfoPv+0x220) &lt;span class=&quot;error&quot;&gt;&amp;#91;0xa591d0&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /lib64/libpthread.so.0 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x3265a0eb10&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(_ZN5mongo9writelockD1Ev+0x151) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x72c971&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(_ZN5mongo3dur7recoverEv+0x8e) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x738ebe&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(_ZN5mongo3dur7startupEv+0x2a) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x727baa&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(_ZN5mongo14_initAndListenEi+0x3d9) &lt;span class=&quot;error&quot;&gt;&amp;#91;0xa5c8c9&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(_ZN5mongo13initAndListenEi+0x2a) &lt;span class=&quot;error&quot;&gt;&amp;#91;0xa5d38a&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(main+0x79cf) &lt;span class=&quot;error&quot;&gt;&amp;#91;0xa6546f&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /lib64/libc.so.6(__libc_start_main+0xf4) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x326461d994&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(__gxx_personality_v0+0x459) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x4db589&amp;#93;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;Logstream::get called in uninitialized state&lt;br/&gt;
Tue Sep 13 01:04:42 ERROR: Client::shutdown not called: initandlisten&lt;/p&gt;

&lt;p&gt;I&apos;ve attached the strace of running&lt;br/&gt;
&apos;strace -s 100 mongod --port 9999 --dbpath /tmp/does_not_exist 2&amp;gt;mongod.strace&apos;&lt;/p&gt;

&lt;p&gt;An 1.8.3 installation on the same server runs without any problems using the same configuration.&lt;/p&gt;</description>
                <environment>CentOS 5.6 64bit</environment>
        <key id="22157">SERVER-3825</key>
            <summary>Segmentation fault on CentOS 5.6</summary>
                <type id="1" iconUrl="https://jira.mongodb.org/secure/viewavatar?size=xsmall&amp;avatarId=14703&amp;avatarType=issuetype">Bug</type>
                                            <priority id="2" iconUrl="https://jira.mongodb.org/images/icons/priorities/critical.svg">Critical - P2</priority>
                        <status id="6" iconUrl="https://jira.mongodb.org/images/icons/statuses/closed.png" description="The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.">Closed</status>
                    <statusCategory id="3" key="done" colorName="success"/>
                                    <resolution id="9">Done</resolution>
                                        <assignee username="mathias@mongodb.com">Mathias Stearn</assignee>
                                    <reporter username="msnexploder">Stefan Huber</reporter>
                        <labels>
                            <label>crash</label>
                    </labels>
                <created>Tue, 13 Sep 2011 01:05:11 +0000</created>
                <updated>Fri, 30 Mar 2012 14:26:56 +0000</updated>
                            <resolved>Tue, 13 Sep 2011 21:34:00 +0000</resolved>
                                    <version>2.0.0</version>
                                                    <component>Stability</component>
                                        <votes>0</votes>
                                    <watches>3</watches>
                                                                                                                <comments>
                            <comment id="53853" author="eliot" created="Tue, 13 Sep 2011 21:34:00 +0000"  >&lt;p&gt;great&lt;/p&gt;</comment>
                            <comment id="53831" author="msnexploder" created="Tue, 13 Sep 2011 20:54:45 +0000"  >&lt;p&gt;just rebuild using a newer version of boost (namely 1.41)&lt;br/&gt;
Works as expected now. &lt;img class=&quot;emoticon&quot; src=&quot;https://jira.mongodb.org/images/icons/emoticons/smile.png&quot; height=&quot;16&quot; width=&quot;16&quot; align=&quot;absmiddle&quot; alt=&quot;&quot; border=&quot;0&quot;/&gt;&lt;/p&gt;</comment>
                            <comment id="53805" author="eliot" created="Tue, 13 Sep 2011 19:24:33 +0000"  >&lt;p&gt;That version of boost is known to have bugs, can you try updating?&lt;/p&gt;</comment>
                            <comment id="53804" author="msnexploder" created="Tue, 13 Sep 2011 19:21:55 +0000"  >&lt;p&gt;BOOST_LIB_VERSION=1_33_1&lt;/p&gt;

&lt;p&gt;Building is essentially done using these steps:&lt;br/&gt;
cd /opt/src &amp;amp;&amp;amp; wget &lt;a href=&quot;http://downloads.mongodb.org/src/mongodb-src-r2.0.0.tar.gz&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;http://downloads.mongodb.org/src/mongodb-src-r2.0.0.tar.gz&lt;/a&gt;&lt;br/&gt;
tar xzf mongodb-src-r2.0.0.tar.gz &amp;amp;&amp;amp; cd mongodb-src-r2.0.0&lt;br/&gt;
scons --prefix=/opt/mongodb-2.0.0 install&lt;/p&gt;</comment>
                            <comment id="53800" author="eliot" created="Tue, 13 Sep 2011 19:11:29 +0000"  >&lt;p&gt;what version of boost do you have installed, and how did you compile?&lt;/p&gt;</comment>
                            <comment id="53798" author="msnexploder" created="Tue, 13 Sep 2011 19:08:30 +0000"  >&lt;p&gt;The binary was build directly on the server the same way as various 1.8 builds before.&lt;br/&gt;
Just tried the official binary which works flawlessly.&lt;/p&gt;</comment>
                            <comment id="53787" author="eliot" created="Tue, 13 Sep 2011 18:47:50 +0000"  >&lt;p&gt;Where is this binary from?&lt;br/&gt;
Can you try with an official binary?&lt;/p&gt;</comment>
                            <comment id="53785" author="msnexploder" created="Tue, 13 Sep 2011 18:43:33 +0000"  >&lt;p&gt;I created the directory just for testing e.g. it was completely empty before running mongodb.&lt;br/&gt;
Afterwards:&lt;/p&gt;

&lt;p&gt;&lt;span class=&quot;error&quot;&gt;&amp;#91;root@Jeeves ~&amp;#93;&lt;/span&gt;# ls -la /data/db&lt;br/&gt;
total 16&lt;br/&gt;
drwxr-xr-x 3 root root 4096 Sep 13 18:33 .&lt;br/&gt;
drwxr-xr-x 3 root root 4096 Sep 13 18:33 ..&lt;br/&gt;
drwxr-xr-x 2 root root 4096 Sep 13 18:33 journal&lt;br/&gt;
-rwxr-xr-x 1 root root    6 Sep 13 18:33 mongod.lock&lt;/p&gt;</comment>
                            <comment id="53780" author="eliot" created="Tue, 13 Sep 2011 18:35:04 +0000"  >&lt;p&gt;What&apos;s in /data/db/&lt;/p&gt;</comment>
                            <comment id="53739" author="msnexploder" created="Tue, 13 Sep 2011 16:33:25 +0000"  >&lt;p&gt;Still the same issue using an empty directory and without my mongod.conf file&lt;/p&gt;

&lt;p&gt;&lt;span class=&quot;error&quot;&gt;&amp;#91;root@Jeeves ~&amp;#93;&lt;/span&gt;# /opt/mongodb-2.0.0/bin/mongod -vvv&lt;br/&gt;
Tue Sep 13 18:33:55 BackgroundJob starting: DataFileSync&lt;br/&gt;
Tue Sep 13 18:33:55 isInRangeTest passed&lt;br/&gt;
Tue Sep 13 18:33:55 shardKeyTest passed&lt;br/&gt;
Tue Sep 13 18:33:55 shardObjTest passed&lt;br/&gt;
Tue Sep 13 18:33:55 versionCmpTest passed&lt;br/&gt;
Tue Sep 13 18:33:55 versionArrayTest passed&lt;br/&gt;
Tue Sep 13 18:33:55 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; MongoDB starting : pid=11906 port=27017 dbpath=/data/db/ 64-bit host=Jeeves&lt;br/&gt;
Tue Sep 13 18:33:55 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; db version v2.0.0, pdfile version 4.5&lt;br/&gt;
Tue Sep 13 18:33:55 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; git version: nogitversion&lt;br/&gt;
Tue Sep 13 18:33:55 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; build info: Linux Jeeves 2.6.18-238.19.1.el5 #1 SMP Fri Jul 15 07:31:24 EDT 2011 x86_64 BOOST_LIB_VERSION=1_33_1&lt;br/&gt;
Tue Sep 13 18:33:55 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; options: &lt;/p&gt;
{ vvv: true }
&lt;p&gt;Tue Sep 13 18:33:55 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; flushing directory /data/db&lt;br/&gt;
Tue Sep 13 18:33:55 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; journal dir=/data/db/journal&lt;br/&gt;
Tue Sep 13 18:33:55 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; recover : no journal files present, no recovery needed&lt;br/&gt;
Tue Sep 13 18:33:55 Invalid access at address: 0x10&lt;/p&gt;

&lt;p&gt;Tue Sep 13 18:33:55 Got signal: 11 (Segmentation fault).&lt;/p&gt;

&lt;p&gt;Tue Sep 13 18:33:55 Backtrace:&lt;br/&gt;
0xa58bf9 0xa591d0 0x3265a0eb10 0x72c971 0x738ebe 0x727baa 0xa5c8c9 0xa5d38a 0xa6546f 0x326461d994 0x4db589 &lt;br/&gt;
 /opt/mongodb-2.0.0/bin/mongod(_ZN5mongo10abruptQuitEi+0x399) &lt;span class=&quot;error&quot;&gt;&amp;#91;0xa58bf9&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /opt/mongodb-2.0.0/bin/mongod(_ZN5mongo24abruptQuitWithAddrSignalEiP7siginfoPv+0x220) &lt;span class=&quot;error&quot;&gt;&amp;#91;0xa591d0&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /lib64/libpthread.so.0 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x3265a0eb10&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /opt/mongodb-2.0.0/bin/mongod(_ZN5mongo9writelockD1Ev+0x151) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x72c971&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /opt/mongodb-2.0.0/bin/mongod(_ZN5mongo3dur7recoverEv+0x8e) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x738ebe&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /opt/mongodb-2.0.0/bin/mongod(_ZN5mongo3dur7startupEv+0x2a) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x727baa&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /opt/mongodb-2.0.0/bin/mongod(_ZN5mongo14_initAndListenEi+0x3d9) &lt;span class=&quot;error&quot;&gt;&amp;#91;0xa5c8c9&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /opt/mongodb-2.0.0/bin/mongod(_ZN5mongo13initAndListenEi+0x2a) &lt;span class=&quot;error&quot;&gt;&amp;#91;0xa5d38a&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /opt/mongodb-2.0.0/bin/mongod(main+0x79cf) &lt;span class=&quot;error&quot;&gt;&amp;#91;0xa6546f&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /lib64/libc.so.6(__libc_start_main+0xf4) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x326461d994&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /opt/mongodb-2.0.0/bin/mongod(__gxx_personality_v0+0x459) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x4db589&amp;#93;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;Logstream::get called in uninitialized state&lt;br/&gt;
Tue Sep 13 18:33:55 ERROR: Client::shutdown not called: initandlisten&lt;/p&gt;

&lt;p&gt;Edited: Include right log message&lt;/p&gt;</comment>
                            <comment id="53712" author="eliot" created="Tue, 13 Sep 2011 15:31:56 +0000"  >&lt;p&gt;Can you remove the old journal directory?&lt;/p&gt;</comment>
                            <comment id="53665" author="msnexploder" created="Tue, 13 Sep 2011 11:09:58 +0000"  >&lt;p&gt;&lt;span class=&quot;error&quot;&gt;&amp;#91;root@Jeeves ~&amp;#93;&lt;/span&gt;# ls -la /var/mongodb/&lt;br/&gt;
total 20&lt;br/&gt;
drwxr-xr-x  3 mongod mongod 4096 Sep 13 01:18 .&lt;br/&gt;
drwxr-xr-x 21 root   root   4096 Jul 18 01:53 ..&lt;br/&gt;
drwxr-xr-x  2 mongod mongod 4096 Sep 13 01:20 journal&lt;br/&gt;
&lt;del&gt;rw-r&lt;/del&gt;&lt;del&gt;r&lt;/del&gt;-  1 root   root   1635 Sep 13 01:16 mongod.conf&lt;br/&gt;
-rwxr-xr-x  1 mongod mongod    6 Sep 13 01:18 mongod.lock&lt;br/&gt;
&lt;span class=&quot;error&quot;&gt;&amp;#91;root@Jeeves ~&amp;#93;&lt;/span&gt;# &lt;/p&gt;

&lt;p&gt;I attached my config file which I forgot in the first place.&lt;/p&gt;</comment>
                            <comment id="53628" author="eliot" created="Tue, 13 Sep 2011 05:52:26 +0000"  >&lt;p&gt;The 2.0 starts seems to be using /var/mongodb&lt;br/&gt;
Is there anything in there?&lt;/p&gt;</comment>
                    </comments>
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                            <attachment id="13051" name="mongod-jeeves.strace" size="16035" author="msnexploder" created="Tue, 13 Sep 2011 01:05:11 +0000"/>
                            <attachment id="13058" name="mongod.conf" size="1635" author="msnexploder" created="Tue, 13 Sep 2011 11:10:08 +0000"/>
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