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    <title>MongoDB Jira</title>
    <link>https://jira.mongodb.org</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>9.7.1</version>
        <build-number>970001</build-number>
        <build-date>13-04-2023</build-date>
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<item>
            <title>[SERVER-38386] we have applied os patch for our centos instances during appliying os patch first we have stepdown primaries to secondaries and the applied to secondaries after this we have done for ather insatnces so mongodb version had changed to 3.4.3 to 3.4.18 </title>
                <link>https://jira.mongodb.org/browse/SERVER-38386</link>
                <project id="10000" key="SERVER">Core Server</project>
                    <description></description>
                <environment>mongodb sharded cluster</environment>
        <key id="642653">SERVER-38386</key>
            <summary>we have applied os patch for our centos instances during appliying os patch first we have stepdown primaries to secondaries and the applied to secondaries after this we have done for ather insatnces so mongodb version had changed to 3.4.3 to 3.4.18 </summary>
                <type id="6" iconUrl="https://jira.mongodb.org/secure/viewavatar?size=xsmall&amp;avatarId=14720&amp;avatarType=issuetype">Question</type>
                                            <priority id="4" iconUrl="https://jira.mongodb.org/images/icons/priorities/minor.svg">Minor - P4</priority>
                        <status id="6" iconUrl="https://jira.mongodb.org/images/icons/statuses/closed.png" description="The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.">Closed</status>
                    <statusCategory id="3" key="done" colorName="success"/>
                                    <resolution id="9">Done</resolution>
                                        <assignee username="ramon.fernandez@mongodb.com">Ramon Fernandez Marina</assignee>
                                    <reporter username="devis">ashok</reporter>
                        <labels>
                    </labels>
                <created>Tue, 4 Dec 2018 11:14:53 +0000</created>
                <updated>Tue, 4 Dec 2018 18:08:42 +0000</updated>
                            <resolved>Tue, 4 Dec 2018 15:40:58 +0000</resolved>
                                    <version>3.4.18</version>
                                                    <component>Admin</component>
                                        <votes>0</votes>
                                    <watches>5</watches>
                                                                                                                <comments>
                            <comment id="2080135" author="devis" created="Tue, 4 Dec 2018 18:08:42 +0000"  >&lt;p&gt;but while checking i can see the rs,status() all are communicating is there any problem&#160;&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;

&lt;p&gt;{&lt;br/&gt;
&quot;set&quot; : &quot;rs4&quot;,&lt;br/&gt;
&quot;date&quot; : ISODate(&quot;2018-12-04T08:10:22.717Z&quot;),&lt;br/&gt;
&quot;myState&quot; : 1,&lt;br/&gt;
&quot;term&quot; : NumberLong(54),&lt;br/&gt;
&quot;syncingTo&quot; : &quot;&quot;,&lt;br/&gt;
&quot;syncSourceHost&quot; : &quot;&quot;,&lt;br/&gt;
&quot;syncSourceId&quot; : -1,&lt;br/&gt;
&quot;heartbeatIntervalMillis&quot; : NumberLong(2000),&lt;br/&gt;
&quot;optimes&quot; : {&lt;br/&gt;
&quot;lastCommittedOpTime&quot; : &lt;/p&gt;
{
&quot;ts&quot; : Timestamp(1543911022, 73),
&quot;t&quot; : NumberLong(54)
}
&lt;p&gt;,&lt;br/&gt;
&quot;appliedOpTime&quot; : &lt;/p&gt;
{
&quot;ts&quot; : Timestamp(1543911022, 80),
&quot;t&quot; : NumberLong(54)
}
&lt;p&gt;,&lt;br/&gt;
&quot;durableOpTime&quot; : &lt;/p&gt;
{
&quot;ts&quot; : Timestamp(1543911022, 73),
&quot;t&quot; : NumberLong(54)
}
&lt;p&gt;},&lt;br/&gt;
&quot;members&quot; : [&lt;br/&gt;
{&lt;br/&gt;
&quot;_id&quot; : 0,&lt;br/&gt;
&quot;name&quot; : &quot;host1:27017&quot;,&lt;br/&gt;
&quot;health&quot; : 1,&lt;br/&gt;
&quot;state&quot; : 1,&lt;br/&gt;
&quot;stateStr&quot; : &quot;PRIMARY&quot;,&lt;br/&gt;
&quot;uptime&quot; : 223648,&lt;br/&gt;
&quot;optime&quot; : &lt;/p&gt;
{
&quot;ts&quot; : Timestamp(1543911022, 80),
&quot;t&quot; : NumberLong(54)
}
&lt;p&gt;,&lt;br/&gt;
&quot;optimeDate&quot; : ISODate(&quot;2018-12-04T08:10:22Z&quot;),&lt;br/&gt;
&quot;syncingTo&quot; : &quot;&quot;,&lt;br/&gt;
&quot;syncSourceHost&quot; : &quot;&quot;,&lt;br/&gt;
&quot;syncSourceId&quot; : -1,&lt;br/&gt;
&quot;infoMessage&quot; : &quot;&quot;,&lt;br/&gt;
&quot;electionTime&quot; : Timestamp(1543689235, 1),&lt;br/&gt;
&quot;electionDate&quot; : ISODate(&quot;2018-12-01T18:33:55Z&quot;),&lt;br/&gt;
&quot;configVersion&quot; : 2,&lt;br/&gt;
&quot;self&quot; : true,&lt;br/&gt;
&quot;lastHeartbeatMessage&quot; : &quot;&quot;&lt;br/&gt;
},&lt;br/&gt;
{&lt;br/&gt;
&quot;_id&quot; : 1,&lt;br/&gt;
&quot;name&quot; : &quot;host2:27017&quot;,&lt;br/&gt;
&quot;health&quot; : 1,&lt;br/&gt;
&quot;state&quot; : 2,&lt;br/&gt;
&quot;stateStr&quot; : &quot;SECONDARY&quot;,&lt;br/&gt;
&quot;uptime&quot; : 219744,&lt;br/&gt;
&quot;optime&quot; : &lt;/p&gt;
{
&quot;ts&quot; : Timestamp(1543911021, 630),
&quot;t&quot; : NumberLong(54)
}
&lt;p&gt;,&lt;br/&gt;
&quot;optimeDurable&quot; : &lt;/p&gt;
{
&quot;ts&quot; : Timestamp(1543911021, 630),
&quot;t&quot; : NumberLong(54)
}
&lt;p&gt;,&lt;br/&gt;
&quot;optimeDate&quot; : ISODate(&quot;2018-12-04T08:10:21Z&quot;),&lt;br/&gt;
&quot;optimeDurableDate&quot; : ISODate(&quot;2018-12-04T08:10:21Z&quot;),&lt;br/&gt;
&quot;lastHeartbeat&quot; : ISODate(&quot;2018-12-04T08:10:21.821Z&quot;),&lt;br/&gt;
&quot;lastHeartbeatRecv&quot; : ISODate(&quot;2018-12-04T08:10:21.238Z&quot;),&lt;br/&gt;
&quot;pingMs&quot; : NumberLong(2),&lt;br/&gt;
&quot;lastHeartbeatMessage&quot; : &quot;&quot;,&lt;br/&gt;
&quot;syncingTo&quot; : &quot;host1:27017&quot;,&lt;br/&gt;
&quot;syncSourceHost&quot; : &quot;host1:27017&quot;,&lt;br/&gt;
&quot;syncSourceId&quot; : 0,&lt;br/&gt;
&quot;infoMessage&quot; : &quot;&quot;,&lt;br/&gt;
&quot;configVersion&quot; : 2&lt;br/&gt;
},&lt;/p&gt;
{
&quot;_id&quot; : 2,
&quot;name&quot; : &quot;host3:27017&quot;,
&quot;health&quot; : 1,
&quot;state&quot; : 7,
&quot;stateStr&quot; : &quot;ARBITER&quot;,
&quot;uptime&quot; : 217600,
&quot;lastHeartbeat&quot; : ISODate(&quot;2018-12-04T08:10:22.359Z&quot;),
&quot;lastHeartbeatRecv&quot; : ISODate(&quot;2018-12-04T08:10:21.615Z&quot;),
&quot;pingMs&quot; : NumberLong(2),
&quot;lastHeartbeatMessage&quot; : &quot;&quot;,
&quot;syncingTo&quot; : &quot;&quot;,
&quot;syncSourceHost&quot; : &quot;&quot;,
&quot;syncSourceId&quot; : -1,
&quot;infoMessage&quot; : &quot;&quot;,
&quot;configVersion&quot; : 2
}
&lt;p&gt;],&lt;br/&gt;
&quot;ok&quot; : 1&lt;br/&gt;
}&lt;/p&gt;</comment>
                            <comment id="2079860" author="ramon.fernandez" created="Tue, 4 Dec 2018 15:40:25 +0000"  >&lt;p&gt;&lt;a href=&quot;https://jira.mongodb.org/secure/ViewProfile.jspa?name=devis&quot; class=&quot;user-hover&quot; rel=&quot;devis&quot;&gt;devis&lt;/a&gt;, these messages indicate that some of your hosts were not able to contact other members of the replica set. If during this OS patching you rebooted some nodes these messages are expected.&lt;/p&gt;

&lt;p&gt;Please note that the SERVER project is for reporting bugs or feature suggestions for the MongoDB server. For MongoDB-related support discussion please post on the &lt;a href=&quot;http://groups.google.com/group/mongodb-user&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;mongodb-user group&lt;/a&gt; or &lt;a href=&quot;http://stackoverflow.com/questions/tagged/mongodb&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;Stack Overflow with the &lt;tt&gt;mongodb&lt;/tt&gt; tag&lt;/a&gt;, where your question will reach a larger audience. A question like this involving more discussion would be best posted on the &lt;a href=&quot;http://groups.google.com/group/mongodb-user&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;mongodb-user group&lt;/a&gt;. See also our &lt;a href=&quot;https://www.mongodb.org/about/support/&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;Technical Support page&lt;/a&gt; for additional support resources.&lt;/p&gt;

&lt;p&gt;Thanks,&lt;br/&gt;
Ram&#243;n.&lt;/p&gt;</comment>
                            <comment id="2079631" author="devis" created="Tue, 4 Dec 2018 11:22:13 +0000"  >&lt;p&gt;so after appling os patch there are some errors in secondary instances so what the solution for this errors&lt;/p&gt;

&lt;p&gt;Log File Monitoring : key = error, File = /var/log/mongodb/mongod.log (host2:log&lt;span class=&quot;error&quot;&gt;&amp;#91;/var/log/mongodb/mongod.log,@mongodb_error,UTF-8&amp;#93;&lt;/span&gt;): 2018-12-03T01:28:46.488+0900 I REPL &lt;span class=&quot;error&quot;&gt;&amp;#91;replication-124&amp;#93;&lt;/span&gt; Restarting oplog query due to error: ExceededTimeLimit: Operation timed out, request was RemoteCommand 6180606 &amp;#8211; target:host1:27017 db:local expDate:2018-12-03T01:28:46.488+0900 cmd:{ getMore: 13368567528, collection: &quot;oplog.rs&quot;, maxTimeMS: 5000, term: 56, lastKnownCommittedOpTime: &lt;/p&gt;
{ ts: Timestamp 1543768105000|1616, t: 56 }
&lt;p&gt; }. Last fetched optime (with hash): { ts: Timestamp 1543768108000|3077, t: 56 }&lt;span class=&quot;error&quot;&gt;&amp;#91;1648692797459653016&amp;#93;&lt;/span&gt;. Restarts remaining: 1&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;

&lt;p&gt;Log File Monitoring : key = error, File = /var/log/mongodb/mongod.log (host2:log&lt;span class=&quot;error&quot;&gt;&amp;#91;/var/log/mongodb/mongod.log,@mongodb_error,UTF-8&amp;#93;&lt;/span&gt;): 2018-12-03T01:28:46.492+0900 W REPL &lt;span class=&quot;error&quot;&gt;&amp;#91;rsBackgroundSync&amp;#93;&lt;/span&gt; Fetcher stopped querying remote oplog with error: InvalidSyncSource: Sync source&apos;s last applied OpTime { ts: Timestamp 1543768108000|3077, t: 56 } is not greater than our last fetched OpTime { ts: Timestamp 1543768108000|3077, t: 56 }. Choosing new sync source.&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;


&lt;p&gt;Log File Monitoring : key = error, File = /var/log/mongodb/mongod.log (host2:log&lt;span class=&quot;error&quot;&gt;&amp;#91;/var/log/mongodb/mongod.log,@mongodb_error,UTF-8&amp;#93;&lt;/span&gt;): 2018-12-03T01:28:57.021+0900 I REPL &lt;span class=&quot;error&quot;&gt;&amp;#91;SyncSourceFeedback&amp;#93;&lt;/span&gt; SyncSourceFeedback error sending update to mgdb10:27017: InvalidSyncSource: Sync source was cleared. Was host1:27017&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;


&lt;p&gt;Log File Monitoring : key = error, File = /var/log/mongodb/mongod.log (host2:log&lt;span class=&quot;error&quot;&gt;&amp;#91;/var/log/mongodb/mongod.log,@mongodb_error,UTF-8&amp;#93;&lt;/span&gt;): 2018-12-03T01:29:27.019+0900 I REPL &lt;span class=&quot;error&quot;&gt;&amp;#91;replication-124&amp;#93;&lt;/span&gt; Blacklisting host1:27017 due to error: &apos;ExceededTimeLimit: Operation timed out, request was RemoteCommand 6180665 &amp;#8211; target:mgdb10:27017 db:local expDate:2018-12-03T01:29:27.019+0900 cmd:{ find: &quot;oplog.rs&quot;, limit: 1, sort: &lt;/p&gt;
{ $natural: 1 }
&lt;p&gt; }&apos; for 10s until: 2018-12-03T01:29:37.019+0900&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;


&lt;p&gt; Log File Monitoring : key = error, File = /var/log/mongodb/mongod.log (host2:log&lt;span class=&quot;error&quot;&gt;&amp;#91;/var/log/mongodb/mongod.log,@mongodb_error,UTF-8&amp;#93;&lt;/span&gt;): 2018-12-03T03:46:23.439+0900 W REPL &lt;span class=&quot;error&quot;&gt;&amp;#91;rsBackgroundSync&amp;#93;&lt;/span&gt; Fetcher stopped querying remote oplog with error: InvalidSyncSource: Sync source&apos;s last applied OpTime { ts: Timestamp 1543776373000|159, t: 56 } is not greater than our last fetched OpTime { ts: Timestamp 1543776373000|159, t: 56 }. Choosing new sync source.&lt;/p&gt;





&lt;p&gt; Log File Monitoring : key = error, File = /var/log/mongodb/mongod.log (host2:log&lt;span class=&quot;error&quot;&gt;&amp;#91;/var/log/mongodb/mongod.log,@mongodb_error,UTF-8&amp;#93;&lt;/span&gt;): 2018-12-03T03:46:23.813+0900 I REPL &lt;span class=&quot;error&quot;&gt;&amp;#91;SyncSourceFeedback&amp;#93;&lt;/span&gt; SyncSourceFeedback error sending update to host1:27017: InvalidSyncSource: Sync source was cleared. Was mgdb10:27017&lt;/p&gt;





&lt;p&gt;Log File Monitoring : key = error, File = /var/log/mongodb/mongod.log (host2:log&lt;span class=&quot;error&quot;&gt;&amp;#91;/var/log/mongodb/mongod.log,@mongodb_error,UTF-8&amp;#93;&lt;/span&gt;): 2018-12-03T03:46:23.436+0900 I REPL &lt;span class=&quot;error&quot;&gt;&amp;#91;replication-181&amp;#93;&lt;/span&gt; Restarting oplog query due to error: ExceededTimeLimit: Operation timed out, request was RemoteCommand 8160211 &amp;#8211; targethost1:27017 db:local expDate:2018-12-03T03:46:23.436+0900 cmd:{ getMore: 17016421045, collection: &quot;oplog.rs&quot;, maxTimeMS: 5000, term: 56, lastKnownCommittedOpTime: &lt;/p&gt;
{ ts: Timestamp 1543776367000|2413, t: 56 }
&lt;p&gt; }. Last fetched optime (with hash): { ts: Timestamp 1543776373000|159, t: 56 }&lt;span class=&quot;error&quot;&gt;&amp;#91;465843254614406443&amp;#93;&lt;/span&gt;. Restarts remaining: 1&lt;/p&gt;





&lt;p&gt; Log File Monitoring : key = error, File = /var/log/mongodb/mongod.log (host2:log&lt;span class=&quot;error&quot;&gt;&amp;#91;/var/log/mongodb/mongod.log,@mongodb_error,UTF-8&amp;#93;&lt;/span&gt;): 2018-12-02T10:58:18.438+0900 I REPL &lt;span class=&quot;error&quot;&gt;&amp;#91;replication-29&amp;#93;&lt;/span&gt; Restarting oplog query due to error: ExceededTimeLimit: Operation timed out, request was RemoteCommand 1510412 &amp;#8211; targethost1:27017 db:local expDate:2018-12-02T10:58:18.438+0900 cmd:{ getMore: 12893146852, collection: &quot;oplog.rs&quot;, maxTimeMS: 5000, term: 56, lastKnownCommittedOpTime: &lt;/p&gt;
{ ts: Timestamp 1543715861000|535, t: 56 }
&lt;p&gt; }. Last fetched optime (with hash): { ts: Timestamp 1543715861000|535, t: 56 }&lt;span class=&quot;error&quot;&gt;&amp;#91;3503435631733766496&amp;#93;&lt;/span&gt;. Restarts remaining: 1&lt;/p&gt;



&lt;p&gt;Log File Monitoring : key = error, File = /var/log/mongodb/mongod.log (host2:log&lt;span class=&quot;error&quot;&gt;&amp;#91;/var/log/mongodb/mongod.log,@mongodb_error,UTF-8&amp;#93;&lt;/span&gt;): 2018-12-02T11:00:20.396+0900 I REPL &lt;span class=&quot;error&quot;&gt;&amp;#91;replication-29&amp;#93;&lt;/span&gt; Restarting oplog query due to error: ExceededTimeLimit: Operation timed out, request was RemoteCommand 1553262 &amp;#8211; targethost1:27017 db:local expDate:2018-12-02T11:00:20.395+0900 cmd:{ getMore: 15438416091, collection: &quot;oplog.rs&quot;, maxTimeMS: 5000, term: 56, lastKnownCommittedOpTime: &lt;/p&gt;
{ ts: Timestamp 1543715987000|3798, t: 56 }
&lt;p&gt; }. Last fetched optime (with hash): { ts: Timestamp 1543715999000|4357, t: 56 }&lt;span class=&quot;error&quot;&gt;&amp;#91;-7341725814870579233&amp;#93;&lt;/span&gt;. Restarts remaining: 1&lt;/p&gt;




&lt;p&gt;Log File Monitoring : key = error, File = /var/log/mongodb/mongod.log (host2:log&lt;span class=&quot;error&quot;&gt;&amp;#91;/var/log/mongodb/mongod.log,@mongodb_error,UTF-8&amp;#93;&lt;/span&gt;): 2018-12-02T12:06:50.524+0900 I REPL &lt;span class=&quot;error&quot;&gt;&amp;#91;replication-52&amp;#93;&lt;/span&gt; Restarting oplog query due to error: ExceededTimeLimit: Operation timed out, request was RemoteCommand 2258462 &amp;#8211; target:host1:27017 db:local expDate:2018-12-02T12:06:50.523+0900 cmd:{ getMore: 14321104679, collection: &quot;oplog.rs&quot;, maxTimeMS: 5000, term: 56, lastKnownCommittedOpTime: &lt;/p&gt;
{ ts: Timestamp 1543719982000|3, t: 56 }
&lt;p&gt; }. Last fetched optime (with hash): { ts: Timestamp 1543719986000|154, t: 56 }&lt;span class=&quot;error&quot;&gt;&amp;#91;-5074056598720909310&amp;#93;&lt;/span&gt;. Restarts remaining: 1&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;</comment>
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