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<channel>
    <title>MongoDB Jira</title>
    <link>https://jira.mongodb.org</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>9.7.1</version>
        <build-number>970001</build-number>
        <build-date>13-04-2023</build-date>
    </build-info>


<item>
            <title>[SERVER-3880] mongod abort trap after creating index &quot;too many open files&quot;</title>
                <link>https://jira.mongodb.org/browse/SERVER-3880</link>
                <project id="10000" key="SERVER">Core Server</project>
                    <description>&lt;p&gt;After creating an index, the mongod went down. I am not sure whether the index is the problem. The db is 33GB&lt;/p&gt;


&lt;p&gt;mongod says:&lt;/p&gt;

&lt;p&gt;Thu Sep 15 19:26:27 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn53&amp;#93;&lt;/span&gt; 	 external sort used : 324 files  in 2843 secs&lt;br/&gt;
Thu Sep 15 19:26:27 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn53&amp;#93;&lt;/span&gt; couldn&apos;t open /data/db/_tmp/esort.1316126343.1867758269//file.131 errno:24 Too many open files&lt;br/&gt;
Thu Sep 15 19:26:27 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn53&amp;#93;&lt;/span&gt; Assertion: 10308:mmap failed&lt;br/&gt;
...&lt;br/&gt;
Abort trap&lt;/p&gt;

&lt;p&gt;and restarts&lt;/p&gt;



&lt;p&gt;&amp;#8212; mongod console &amp;#8212;&lt;/p&gt;

&lt;p&gt;...&lt;br/&gt;
Thu Sep 15 18:34:24 &lt;span class=&quot;error&quot;&gt;&amp;#91;clientcursormon&amp;#93;&lt;/span&gt; mem (MB) res:3602 virt:262933 mapped:130088&lt;br/&gt;
Thu Sep 15 18:39:03 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn53&amp;#93;&lt;/span&gt; build index &amp;lt;mydb&amp;gt;.&amp;lt;mycollection&amp;gt; &lt;/p&gt;
{ fieldList.field1: 1.0, fieldList.field2: 1.0 }

&lt;p&gt;...&lt;br/&gt;
		19500/19715	98%&lt;br/&gt;
		19600/19715	99%&lt;br/&gt;
		19700/19715	99%&lt;br/&gt;
Thu Sep 15 19:26:27 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn53&amp;#93;&lt;/span&gt; 	 external sort used : 324 files  in 2843 secs&lt;br/&gt;
Thu Sep 15 19:26:27 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn53&amp;#93;&lt;/span&gt; couldn&apos;t open /data/db/_tmp/esort.1316126343.1867758269//file.131 errno:24 Too many open files&lt;br/&gt;
Thu Sep 15 19:26:27 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn53&amp;#93;&lt;/span&gt; Assertion: 10308:mmap failed&lt;br/&gt;
0x1000898dd 0x10044f596 0x10044f928 0x100418dc8 0x100408543 0x1004091ba 0x100409ff0 0x10040b4aa 0x10040cc36 0x1003d44dc 0x1003e0f8f 0x1003e3569 0x100603394 0x100148d8c 0x10060a554 0x7fff81067fd6 0x7fff81067e89 &lt;br/&gt;
 0   mongod                              0x00000001000898dd _ZN5mongo11msgassertedEiPKc + 333&lt;br/&gt;
 1   mongod                              0x000000010044f596 _ZN5mongo21BSONObjExternalSorter12FileIteratorC2ESs + 198&lt;br/&gt;
 2   mongod                              0x000000010044f928 &lt;em&gt;ZN5mongo21BSONObjExternalSorter8IteratorC2EPS0&lt;/em&gt; + 808&lt;br/&gt;
 3   mongod                              0x0000000100418dc8 _ZN5mongo24buildBottomUpPhases2And3INS_12BtreeData_V1EEEvbRNS_12IndexDetailsERNS_21BSONObjExternalSorterEbRSt4listINS_7DiskLocESaIS7_EEPNS_5CurOpEPNS_12SortPhaseOneERNS_19ProgressMeterHolderERNS_5TimerE + 120&lt;br/&gt;
 4   mongod                              0x0000000100408543 _ZN5mongo14fastBuildIndexEPKcPNS_16NamespaceDetailsERNS_12IndexDetailsEi + 2131&lt;br/&gt;
 5   mongod                              0x00000001004091ba _ZN5mongo12buildAnIndexESsPNS_16NamespaceDetailsERNS_12IndexDetailsEib + 938&lt;br/&gt;
 6   mongod                              0x0000000100409ff0 _ZN5mongo16insert_makeIndexEPNS_16NamespaceDetailsERKSsRKNS_7DiskLocE + 448&lt;br/&gt;
 7   mongod                              0x000000010040b4aa _ZN5mongo11DataFileMgr6insertEPKcPKvibbPb + 1050&lt;br/&gt;
 8   mongod                              0x000000010040cc36 _ZN5mongo11DataFileMgr16insertWithObjModEPKcRNS_7BSONObjEb + 70&lt;br/&gt;
 9   mongod                              0x00000001003d44dc _ZN5mongo14checkAndInsertEPKcRNS_7BSONObjE + 172&lt;br/&gt;
 10  mongod                              0x00000001003e0f8f _ZN5mongo14receivedInsertERNS_7MessageERNS_5CurOpE + 639&lt;br/&gt;
 11  mongod                              0x00000001003e3569 _ZN5mongo16assembleResponseERNS_7MessageERNS_10DbResponseERKNS_11HostAndPortE + 4441&lt;br/&gt;
 12  mongod                              0x0000000100603394 _ZN5mongo16MyMessageHandler7processERNS_7MessageEPNS_21AbstractMessagingPortEPNS_9LastErrorE + 148&lt;br/&gt;
 13  mongod                              0x0000000100148d8c _ZN5mongo3pms9threadRunEPNS_13MessagingPortE + 700&lt;br/&gt;
 14  mongod                              0x000000010060a554 thread_proxy + 132&lt;br/&gt;
 15  libSystem.B.dylib                   0x00007fff81067fd6 _pthread_start + 331&lt;br/&gt;
 16  libSystem.B.dylib                   0x00007fff81067e89 thread_start + 13&lt;br/&gt;
Thu Sep 15 19:26:28 terminate() called, printing stack:&lt;br/&gt;
0x1005efaf9 0x7fff8a5a6ae1 0x7fff8a5a5e9c 0x7fff8a5a69fc 0x7fff81093eb1 0x7fff8109d7eb 0x10044ecec 0x10041682a 0x100408c82 0x1004091ba 0x100409ff0 0x10040b4aa 0x10040cc36 0x1003d44dc 0x1003e0f8f 0x1003e3569 0x100603394 0x100148d8c 0x10060a554 0x7fff81067fd6 &lt;br/&gt;
 0   mongod                              0x00000001005efaf9 _ZN5mongo11myterminateEv + 105&lt;br/&gt;
 1   libstdc++.6.dylib                   0x00007fff8a5a6ae1 &lt;em&gt;ZN10&lt;/em&gt;&lt;em&gt;cxxabiv111&lt;/em&gt;_terminateEPFvvE + 11&lt;br/&gt;
 2   libstdc++.6.dylib                   0x00007fff8a5a5e9c __cxa_call_terminate + 46&lt;br/&gt;
 3   libstdc++.6.dylib                   0x00007fff8a5a69fc __gxx_personality_v0 + 1011&lt;br/&gt;
 4   libSystem.B.dylib                   0x00007fff81093eb1 unwind_phase2 + 145&lt;br/&gt;
 5   libSystem.B.dylib                   0x00007fff8109d7eb _Unwind_Resume + 91&lt;br/&gt;
 6   mongod                              0x000000010044ecec _ZN5mongo21BSONObjExternalSorterD2Ev + 524&lt;br/&gt;
 7   mongod                              0x000000010041682a _ZN5boost6detail17sp_counted_impl_pIN5mongo21BSONObjExternalSorterEE7disposeEv + 26&lt;br/&gt;
 8   mongod                              0x0000000100408c82 _ZN5mongo14fastBuildIndexEPKcPNS_16NamespaceDetailsERNS_12IndexDetailsEi + 3986&lt;br/&gt;
 9   mongod                              0x00000001004091ba _ZN5mongo12buildAnIndexESsPNS_16NamespaceDetailsERNS_12IndexDetailsEib + 938&lt;br/&gt;
 10  mongod                              0x0000000100409ff0 _ZN5mongo16insert_makeIndexEPNS_16NamespaceDetailsERKSsRKNS_7DiskLocE + 448&lt;br/&gt;
 11  mongod                              0x000000010040b4aa _ZN5mongo11DataFileMgr6insertEPKcPKvibbPb + 1050&lt;br/&gt;
 12  mongod                              0x000000010040cc36 _ZN5mongo11DataFileMgr16insertWithObjModEPKcRNS_7BSONObjEb + 70&lt;br/&gt;
 13  mongod                              0x00000001003d44dc _ZN5mongo14checkAndInsertEPKcRNS_7BSONObjE + 172&lt;br/&gt;
 14  mongod                              0x00000001003e0f8f _ZN5mongo14receivedInsertERNS_7MessageERNS_5CurOpE + 639&lt;br/&gt;
 15  mongod                              0x00000001003e3569 _ZN5mongo16assembleResponseERNS_7MessageERNS_10DbResponseERKNS_11HostAndPortE + 4441&lt;br/&gt;
 16  mongod                              0x0000000100603394 _ZN5mongo16MyMessageHandler7processERNS_7MessageEPNS_21AbstractMessagingPortEPNS_9LastErrorE + 148&lt;br/&gt;
 17  mongod                              0x0000000100148d8c _ZN5mongo3pms9threadRunEPNS_13MessagingPortE + 700&lt;br/&gt;
 18  mongod                              0x000000010060a554 thread_proxy + 132&lt;br/&gt;
 19  libSystem.B.dylib                   0x00007fff81067fd6 _pthread_start + 331&lt;br/&gt;
Thu Sep 15 19:26:28 Got signal: 6 (Abort trap).&lt;/p&gt;

&lt;p&gt;Abort trap&lt;br/&gt;
Ross:mongodb-osx-x86_64-2.0.0 dietz$ bin/mongod&lt;br/&gt;
bin/mongod --help for help and startup options&lt;br/&gt;
Thu Sep 15 19:26:31 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; MongoDB starting : pid=1798 port=27017 dbpath=/data/db/ 64-bit host=ross.cs.umass.edu&lt;br/&gt;
Thu Sep 15 19:26:31 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; db version v2.0.0, pdfile version 4.5&lt;br/&gt;
Thu Sep 15 19:26:31 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; git version: 695c67dff0ffc361b8568a13366f027caa406222&lt;br/&gt;
Thu Sep 15 19:26:31 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; build info: Darwin erh2.10gen.cc 9.6.0 Darwin Kernel Version 9.6.0: Mon Nov 24 17:37:00 PST 2008; root:xnu-1228.9.59~1/RELEASE_I386 i386 BOOST_LIB_VERSION=1_40&lt;br/&gt;
Thu Sep 15 19:26:31 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; options: {}&lt;br/&gt;
Thu Sep 15 19:26:32 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; journal dir=/data/db/journal&lt;br/&gt;
Thu Sep 15 19:26:32 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; recover begin&lt;br/&gt;
Thu Sep 15 19:26:32 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; recover lsn: 72267032&lt;br/&gt;
Thu Sep 15 19:26:32 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; recover /data/db/journal/j._58&lt;br/&gt;
Thu Sep 15 19:26:32 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; recover skipping application of section seq:71618602 &amp;lt; lsn:72267032&lt;br/&gt;
Thu Sep 15 19:26:33 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; recover skipping application of section seq:71677552 &amp;lt; lsn:72267032&lt;br/&gt;
Thu Sep 15 19:26:35 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; recover skipping application of section seq:71736532 &amp;lt; lsn:72267032&lt;br/&gt;
Thu Sep 15 19:26:36 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; recover skipping application of section seq:71795652 &amp;lt; lsn:72267032&lt;br/&gt;
Thu Sep 15 19:26:38 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; recover skipping application of section seq:71854402 &amp;lt; lsn:72267032&lt;br/&gt;
Thu Sep 15 19:26:39 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; recover skipping application of section seq:71912882 &amp;lt; lsn:72267032&lt;br/&gt;
Thu Sep 15 19:26:39 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; recover skipping application of section seq:71971892 &amp;lt; lsn:72267032&lt;br/&gt;
Thu Sep 15 19:26:40 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; recover /data/db/journal/j._59&lt;br/&gt;
Thu Sep 15 19:26:40 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; recover skipping application of section seq:72030732 &amp;lt; lsn:72267032&lt;br/&gt;
Thu Sep 15 19:26:41 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; recover skipping application of section seq:72089832 &amp;lt; lsn:72267032&lt;br/&gt;
Thu Sep 15 19:26:42 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; recover skipping application of section more...&lt;br/&gt;
Thu Sep 15 19:26:59 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; recover cleaning up&lt;br/&gt;
Thu Sep 15 19:26:59 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; removeJournalFiles&lt;br/&gt;
Thu Sep 15 19:26:59 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; recover done&lt;br/&gt;
Thu Sep 15 19:26:59 &lt;span class=&quot;error&quot;&gt;&amp;#91;websvr&amp;#93;&lt;/span&gt; admin web console waiting for connections on port 28017&lt;br/&gt;
Thu Sep 15 19:26:59 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; waiting for connections on port 27017&lt;br/&gt;
Thu Sep 15 19:27:59 &lt;span class=&quot;error&quot;&gt;&amp;#91;clientcursormon&amp;#93;&lt;/span&gt; mem (MB) res:25 virt:2426 mapped:0&lt;br/&gt;
Thu Sep 15 19:32:59 &lt;span class=&quot;error&quot;&gt;&amp;#91;clientcursormon&amp;#93;&lt;/span&gt; mem (MB) res:26 virt:2426 mapped:0&lt;br/&gt;
Thu Sep 15 19:37:59 &lt;span class=&quot;error&quot;&gt;&amp;#91;clientcursormon&amp;#93;&lt;/span&gt; mem (MB) res:26 virt:2426 mapped:0&lt;/p&gt;



&lt;p&gt;------&lt;/p&gt;

&lt;p&gt;$ lsof | grep mongod&lt;br/&gt;
mongod     1798 dietz  cwd      DIR       14,2        204 8867687 /opt/mongo/mongodb-osx-x86_64-2.0.0&lt;br/&gt;
mongod     1798 dietz  txt      REG       14,2   11817872 8867691 /opt/mongo/mongodb-osx-x86_64-2.0.0/bin/mongod&lt;br/&gt;
mongod     1798 dietz  txt      REG       14,2    1054960 1068215 /usr/lib/dyld&lt;br/&gt;
mongod     1798 dietz  txt      REG       14,2  233623552 8445455 /private/var/db/dyld/dyld_shared_cache_x86_64&lt;br/&gt;
mongod     1798 dietz    0u     CHR       16,0 0t31334702     657 /dev/ttys000&lt;br/&gt;
mongod     1798 dietz    1u     CHR       16,0 0t31334702     657 /dev/ttys000&lt;br/&gt;
mongod     1798 dietz    2u     CHR       16,0 0t31334702     657 /dev/ttys000&lt;br/&gt;
mongod     1798 dietz    3r     CHR        9,1     0t1023     576 /dev/urandom&lt;br/&gt;
mongod     1798 dietz    4u     REG       14,2          5 8732740 /data/db/mongod.lock&lt;br/&gt;
mongod     1798 dietz    5w     REG       14,2       8192 8884882 /data/db/journal/j._0&lt;br/&gt;
mongod     1798 dietz    6u    IPv4 0x1728b748        0t0     TCP *:27017 (LISTEN)&lt;br/&gt;
mongod     1798 dietz    7u    IPv4 0x15d946c8        0t0     TCP *:28017 (LISTEN)&lt;br/&gt;
mongod     1798 dietz    8u    unix 0x0f6f6a70        0t0         /tmp/mongodb-27017.sock&lt;br/&gt;
lsof       1817 dietz  cwd      DIR       14,2        204 8867687 /opt/mongo/mongodb-osx-x86_64-2.0.0&lt;br/&gt;
grep       1818 dietz  cwd      DIR       14,2        204 8867687 /opt/mongo/mongodb-osx-x86_64-2.0.0&lt;br/&gt;
bash      21737 dietz  cwd      DIR       14,2        204 8867687 /opt/mongo/mongodb-osx-x86_64-2.0.0&lt;br/&gt;
bash      21819 dietz  cwd      DIR       14,2        204 8867687 /opt/mongo/mongodb-osx-x86_64-2.0.0&lt;br/&gt;
bash      23891 dietz  cwd      DIR       14,2        204 8867687 /opt/mongo/mongodb-osx-x86_64-2.0.0&lt;br/&gt;
mongo     99108 dietz  cwd      DIR       14,2        204 8867687 /opt/mongo/mongodb-osx-x86_64-2.0.0&lt;br/&gt;
mongo     99108 dietz  txt      REG       14,2    3870368 8867690 /opt/mongo/mongodb-osx-x86_64-2.0.0/bin/mongo&lt;/p&gt;
</description>
                <environment>uname -a&lt;br/&gt;
Darwin 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun  7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386</environment>
        <key id="22422">SERVER-3880</key>
            <summary>mongod abort trap after creating index &quot;too many open files&quot;</summary>
                <type id="1" iconUrl="https://jira.mongodb.org/secure/viewavatar?size=xsmall&amp;avatarId=14703&amp;avatarType=issuetype">Bug</type>
                                            <priority id="3" iconUrl="https://jira.mongodb.org/images/icons/priorities/major.svg">Major - P3</priority>
                        <status id="6" iconUrl="https://jira.mongodb.org/images/icons/statuses/closed.png" description="The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.">Closed</status>
                    <statusCategory id="3" key="done" colorName="success"/>
                                    <resolution id="9">Done</resolution>
                                        <assignee username="-1">Unassigned</assignee>
                                    <reporter username="dietz">Laura Dietz</reporter>
                        <labels>
                            <label>SERVER_V2</label>
                    </labels>
                <created>Thu, 15 Sep 2011 23:45:49 +0000</created>
                <updated>Mon, 11 Jul 2016 18:34:05 +0000</updated>
                            <resolved>Sat, 22 Oct 2011 02:50:54 +0000</resolved>
                                    <version>2.0.0</version>
                                                    <component>Storage</component>
                                        <votes>0</votes>
                                    <watches>2</watches>
                                                                                                                <comments>
                            <comment id="61135" author="fields" created="Tue, 18 Oct 2011 15:24:34 +0000"  >&lt;p&gt;ulimit commands are not honored by OSX. You need to add the following to /etc/launchd.conf:&lt;/p&gt;

&lt;p&gt;limit maxproc 1024 1024&lt;br/&gt;
limit maxfiles 10000 10000&lt;/p&gt;

&lt;p&gt;And reboot. There&apos;s supposedly a way to do this at runtime using the launchctl limit command, but I couldn&apos;t get it to work.&lt;/p&gt;</comment>
                            <comment id="54643" author="eliot" created="Fri, 16 Sep 2011 05:24:36 +0000"  >&lt;p&gt;You need to increase the file descriptor limit for the db.&lt;br/&gt;
ulimit -n 16000 should do it&lt;/p&gt;</comment>
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