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    <title>MongoDB Jira</title>
    <link>https://jira.mongodb.org</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>9.7.1</version>
        <build-number>970001</build-number>
        <build-date>13-04-2023</build-date>
    </build-info>


<item>
            <title>[SERVER-39608] Initial syncer oplog fetcher should skip first doc on retries</title>
                <link>https://jira.mongodb.org/browse/SERVER-39608</link>
                <project id="10000" key="SERVER">Core Server</project>
                    <description>&lt;p&gt;&lt;a href=&quot;https://github.com/mongodb/mongo/commit/4f858c52b05ecc49d2ae19bbaf59fc0aad445b7e&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;https://github.com/mongodb/mongo/commit/4f858c52b05ecc49d2ae19bbaf59fc0aad445b7e&lt;/a&gt; started enqueuing the first document the &lt;tt&gt;OplogFetcher&lt;/tt&gt; returned instead of skipping it. When the &lt;tt&gt;OplogFetcher&lt;/tt&gt; retries its oplog query, if it has enqueued any documents (so not if it&apos;s retrying the very first query before enqueuing anything successfully), then this will cause it to duplicate a document and hit an invariant.&lt;/p&gt;</description>
                <environment></environment>
        <key id="698669">SERVER-39608</key>
            <summary>Initial syncer oplog fetcher should skip first doc on retries</summary>
                <type id="1" iconUrl="https://jira.mongodb.org/secure/viewavatar?size=xsmall&amp;avatarId=14703&amp;avatarType=issuetype">Bug</type>
                                            <priority id="3" iconUrl="https://jira.mongodb.org/images/icons/priorities/major.svg">Major - P3</priority>
                        <status id="6" iconUrl="https://jira.mongodb.org/images/icons/statuses/closed.png" description="The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.">Closed</status>
                    <statusCategory id="3" key="done" colorName="success"/>
                                    <resolution id="13201">Fixed</resolution>
                                        <assignee username="vesselina.ratcheva@mongodb.com">Vesselina Ratcheva</assignee>
                                    <reporter username="judah.schvimer@mongodb.com">Judah Schvimer</reporter>
                        <labels>
                            <label>prepare_initial_sync</label>
                    </labels>
                <created>Fri, 15 Feb 2019 16:47:19 +0000</created>
                <updated>Sun, 29 Oct 2023 22:23:58 +0000</updated>
                            <resolved>Wed, 10 Apr 2019 18:30:21 +0000</resolved>
                                                    <fixVersion>4.1.11</fixVersion>
                                    <component>Replication</component>
                                        <votes>0</votes>
                                    <watches>2</watches>
                                                                                                                <comments>
                            <comment id="2209055" author="luke.chen" created="Thu, 11 Apr 2019 01:41:21 +0000"  >&lt;p&gt;Fixing up the fixVersion as this ticket was not included as part of 4.1.10 release.&lt;/p&gt;</comment>
                            <comment id="2208568" author="xgen-internal-githook" created="Wed, 10 Apr 2019 18:28:23 +0000"  >&lt;p&gt;Author:&lt;/p&gt;
{&apos;email&apos;: &apos;vesselina.ratcheva@10gen.com&apos;, &apos;name&apos;: &apos;Vesselina Ratcheva&apos;, &apos;username&apos;: &apos;vessy-mongodb&apos;}
&lt;p&gt;Message: &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-39608&quot; title=&quot;Initial syncer oplog fetcher should skip first doc on retries&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-39608&quot;&gt;&lt;del&gt;SERVER-39608&lt;/del&gt;&lt;/a&gt; Prevent the OplogFetcher from enqueing a document twice when using StartingPoint::kEnqueueFirstDoc&lt;br/&gt;
Branch: master&lt;br/&gt;
&lt;a href=&quot;https://github.com/mongodb/mongo/commit/6aeb04caaf4470a067e4c589bc09ddb70c9411c3&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;https://github.com/mongodb/mongo/commit/6aeb04caaf4470a067e4c589bc09ddb70c9411c3&lt;/a&gt;&lt;/p&gt;</comment>
                            <comment id="2199931" author="vesselina.ratcheva" created="Tue, 2 Apr 2019 22:21:11 +0000"  >&lt;p&gt;After discussing with &lt;a href=&quot;https://jira.mongodb.org/secure/ViewProfile.jspa?name=judah.schvimer&quot; class=&quot;user-hover&quot; rel=&quot;judah.schvimer&quot;&gt;judah.schvimer&lt;/a&gt;, we decided that making decisions based on the information from the AbstractOplogFetcher was not a good idea. A big problem is that it does not give us enough information about where in the batch we failed - in particular, it cannot tell us whether we failed midway through a batch or failed to fetch anything in the first place.&lt;/p&gt;

&lt;p&gt;This means it won&apos;t solve the bug we&apos;re after. When fetching, we would not be able to distinguish failing right after that one entry from failing before we even get to it - the lastFetched would be the same in both cases. It won&apos;t have moved from the &lt;a href=&quot;https://github.com/mongodb/mongo/blob/f5f28e765740c48d3ed8715e2282365393579b3d/src/mongo/db/repl/initial_syncer.cpp#L937&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;value&lt;/a&gt; given in initial sync. This is where we are in danger of duplicating a document as we don&apos;t know if we enqueued it or not. (The problem arises for the fact that we set lastFetched to a value that we don&apos;t always have (we in the prepare case), but we cannot avoid doing so, which is why we needed the enqueue option).&lt;/p&gt;

&lt;p&gt;The solution would be augment the OplogFetcher in the same place descibed above, except the new factor this time would be whether we have enqueued anything at all with this OplogFetcher so far. This would require the addition of a lifetime-scope boolean in the OplogFetcher which will be set after at least one document has been enqueued, &lt;a href=&quot;https://github.com/mongodb/mongo/blob/75fa5cc276248362c0d6337a54ff38a0bac0b59b/src/mongo/db/repl/oplog_fetcher.cpp#L490&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;here&lt;/a&gt;. If that&apos;s set, we will skip even with StartingPoint::kEnqueueFirstDoc. We wouldn&apos;t need to know anything about what restarts happened or how. The flag would be enough to tell us whether we&apos;ve made any progress.&lt;/p&gt;</comment>
                            <comment id="2198566" author="vesselina.ratcheva" created="Mon, 1 Apr 2019 23:46:06 +0000"  >&lt;p&gt;This is a bit tricky, since the place where we can make decisions about this (&lt;a href=&quot;https://github.com/mongodb/mongo/blob/75fa5cc276248362c0d6337a54ff38a0bac0b59b/src/mongo/db/repl/oplog_fetcher.cpp#L444&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;here&lt;/a&gt;) is different from the place where we detect restarts (&lt;a href=&quot;https://github.com/mongodb/mongo/blob/75fa5cc276248362c0d6337a54ff38a0bac0b59b/src/mongo/db/repl/abstract_oplog_fetcher.cpp#L205&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;here&lt;/a&gt;). OplogFetcher is a subclass of AbstractOplogFetcher. The cleanest solution I&apos;ve found so far is the following:&lt;br/&gt;
1. In AbstractOplogFetcher, expose a getter for the &lt;a href=&quot;https://github.com/mongodb/mongo/blob/75fa5cc276248362c0d6337a54ff38a0bac0b59b/src/mongo/db/repl/abstract_oplog_fetcher.h#L225&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;_fetcherRestarts&lt;/a&gt; as a protected method so that the OplogFetcher has access to it. An existing example of this pattern is &lt;tt&gt;_getLastOpTimeFetched()&lt;/tt&gt;. &lt;br/&gt;
2. In OplogFetcher, amend the skip-or-not clause (see above) to also factor in restarts by using that getter. It should skip on retries even with &lt;tt&gt;StartingPoint::kEnqueueFirstDoc&lt;/tt&gt;.&lt;/p&gt;</comment>
                    </comments>
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                                        <issuelink>
            <issuekey id="584984">SERVER-36489</issuekey>
        </issuelink>
            <issuelink>
            <issuekey id="584986">SERVER-36490</issuekey>
        </issuelink>
            <issuelink>
            <issuekey id="584987">SERVER-36491</issuekey>
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                            <customfieldvalue>&lt;p&gt;Applying this small patch on 29d91ec77892f8b335bcc07ccf96e3240981ab05 reproduces the issue.&lt;/p&gt;

&lt;p/&gt;
&lt;div id=&quot;syntaxplugin&quot; class=&quot;syntaxplugin&quot; style=&quot;border: 1px dashed #bbb; border-radius: 5px !important; overflow: auto; max-height: 30em;&quot;&gt;
&lt;table cellspacing=&quot;0&quot; cellpadding=&quot;0&quot; border=&quot;0&quot; width=&quot;100%&quot; style=&quot;font-size: 1em; line-height: 1.4em !important; font-weight: normal; font-style: normal; color: black;&quot;&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;  margin-top: 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;diff --git a/jstests/replsets/initial_sync_rename_collection.js b/jstests/replsets/initial_sync_rename_collection.js&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;index c428170..727ba4e 100644&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;--- a/jstests/replsets/initial_sync_rename_collection.js&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;+++ b/jstests/replsets/initial_sync_rename_collection.js&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;@@ -71,6 +71,7 @@&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
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				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;         to: primary_db1[collAcrossFinal_name]&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;                 .getFullName()  // Collection &apos;renamed_across&apos; is implicitly created.&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;     }));&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;+    assert.commandWorked(primary.adminCommand({restartCatalog: 1}));&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; &lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;     // Disable fail point so that the secondary can finish its initial sync.&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   margin-bottom: 10px;  width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;     assert.commandWorked(secondary.adminCommand(&lt;/span&gt;&lt;/pre&gt;
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