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    <title>MongoDB Jira</title>
    <link>https://jira.mongodb.org</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>9.7.1</version>
        <build-number>970001</build-number>
        <build-date>13-04-2023</build-date>
    </build-info>


<item>
            <title>[SERVER-40009] Set/honour initial sync flag at the early stages of initial sync</title>
                <link>https://jira.mongodb.org/browse/SERVER-40009</link>
                <project id="10000" key="SERVER">Core Server</project>
                    <description>&lt;p&gt;Symptoms: when the server is restarted at an early stage of the initial sync, the initial sync is unable to resume.&lt;/p&gt;

&lt;p/&gt;
&lt;div id=&quot;syntaxplugin&quot; class=&quot;syntaxplugin&quot; style=&quot;border: 1px dashed #bbb; border-radius: 5px !important; overflow: auto; max-height: 30em;&quot;&gt;
&lt;table cellspacing=&quot;0&quot; cellpadding=&quot;0&quot; border=&quot;0&quot; width=&quot;100%&quot; style=&quot;font-size: 1em; line-height: 1.4em !important; font-weight: normal; font-style: normal; color: black;&quot;&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;  margin-top: 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2019-02-27T14:58:45.498+0000 I REPL [replication-0] Starting initial sync (attempt 1 of 10)&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;...&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2019-02-27T14:58:46.723+0000 I REPL [replication-1] CollectionCloner ns:admin.system.version finished cloning with status: CallbackCanceled: Cloner shutting down.&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2019-02-27T14:58:46.724+0000 W REPL [replication-1] collection clone for &apos;admin.system.version&apos; failed due to CallbackCanceled: Error cloning collection &apos;admin.system.version&apos; :: caused by :: Cloner shutting down.&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;...&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2019-02-27T14:58:49.349+0000 I CONTROL [main] ***** SERVER RESTARTED *****&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;...&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2019-02-27T14:58:50.495+0000 F STORAGE [initandlisten] Unable to start up mongod due to missing featureCompatibilityVersion document.&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2019-02-27T14:58:50.495+0000 F STORAGE [initandlisten] Please run with --repair to restore the document.&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
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				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2019-02-27T14:58:50.495+0000 F - [initandlisten] Fatal Assertion 40652 at src/mongo/db/repair_database_and_check_version.cpp 581&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;2019-02-27T14:58:50.495+0000 F - [initandlisten]&lt;/span&gt;&lt;/pre&gt;
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					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&amp;nbsp;&lt;/pre&gt;
			&lt;/td&gt;
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				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   margin-bottom: 10px;  width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;***aborting after fassert() failure&lt;/span&gt;&lt;/pre&gt;
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&lt;p/&gt;</description>
                <environment></environment>
        <key id="711990">SERVER-40009</key>
            <summary>Set/honour initial sync flag at the early stages of initial sync</summary>
                <type id="1" iconUrl="https://jira.mongodb.org/secure/viewavatar?size=xsmall&amp;avatarId=14703&amp;avatarType=issuetype">Bug</type>
                                            <priority id="3" iconUrl="https://jira.mongodb.org/images/icons/priorities/major.svg">Major - P3</priority>
                        <status id="6" iconUrl="https://jira.mongodb.org/images/icons/statuses/closed.png" description="The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.">Closed</status>
                    <statusCategory id="3" key="done" colorName="success"/>
                                    <resolution id="13201">Fixed</resolution>
                                        <assignee username="jason.chan@mongodb.com">Jason Chan</assignee>
                                    <reporter username="josef.ahmad@mongodb.com">Josef Ahmad</reporter>
                        <labels>
                    </labels>
                <created>Thu, 7 Mar 2019 08:26:53 +0000</created>
                <updated>Sun, 29 Oct 2023 22:23:12 +0000</updated>
                            <resolved>Tue, 25 Jun 2019 14:20:39 +0000</resolved>
                                    <version>4.0.6</version>
                                    <fixVersion>4.2.0-rc3</fixVersion>
                    <fixVersion>4.0.13</fixVersion>
                    <fixVersion>4.3.1</fixVersion>
                                    <component>Replication</component>
                                        <votes>0</votes>
                                    <watches>18</watches>
                                                                                                                <comments>
                            <comment id="3328525" author="lawrence.tan" created="Fri, 7 Aug 2020 20:05:24 +0000"  >&lt;p&gt;Would it be possible to fix this for 3.6 as well? We&apos;ve also been seeing flaky test that appear to be related to this in CLOUDP-68939&lt;/p&gt;</comment>
                            <comment id="2369263" author="xgen-internal-githook" created="Tue, 13 Aug 2019 20:03:21 +0000"  >&lt;p&gt;Author:&lt;/p&gt;
{&apos;name&apos;: &apos;Jason Chan&apos;, &apos;username&apos;: &apos;jasonjhchan&apos;, &apos;email&apos;: &apos;jason.chan@10gen.com&apos;}
&lt;p&gt;Message: &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-40009&quot; title=&quot;Set/honour initial sync flag at the early stages of initial sync&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-40009&quot;&gt;&lt;del&gt;SERVER-40009&lt;/del&gt;&lt;/a&gt; Honor the initial sync flag when in startup without FCV document&lt;/p&gt;

&lt;p&gt;(cherry picked from commit c0c64c95637f8f0700ac40e89dc39c30ec6f5f41)&lt;br/&gt;
Branch: v4.0&lt;br/&gt;
&lt;a href=&quot;https://github.com/mongodb/mongo/commit/45df410133eeb9c4fb1e9f0920a94e861f8c4585&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;https://github.com/mongodb/mongo/commit/45df410133eeb9c4fb1e9f0920a94e861f8c4585&lt;/a&gt;&lt;/p&gt;</comment>
                            <comment id="2310067" author="xgen-internal-githook" created="Tue, 2 Jul 2019 18:41:32 +0000"  >&lt;p&gt;Author:&lt;/p&gt;
{&apos;name&apos;: &apos;Jason Chan&apos;, &apos;username&apos;: &apos;jasonjhchan&apos;, &apos;email&apos;: &apos;jason.chan@10gen.com&apos;}
&lt;p&gt;Message: &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-40009&quot; title=&quot;Set/honour initial sync flag at the early stages of initial sync&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-40009&quot;&gt;&lt;del&gt;SERVER-40009&lt;/del&gt;&lt;/a&gt; Honor the initial sync flag when in startup without FCV document&lt;/p&gt;

&lt;p&gt;(cherry picked from commit c0c64c95637f8f0700ac40e89dc39c30ec6f5f41)&lt;br/&gt;
Branch: v4.2&lt;br/&gt;
&lt;a href=&quot;https://github.com/mongodb/mongo/commit/324f6029326bc01d3adcd17a2467c49887147660&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;https://github.com/mongodb/mongo/commit/324f6029326bc01d3adcd17a2467c49887147660&lt;/a&gt;&lt;/p&gt;</comment>
                            <comment id="2296540" author="xgen-internal-githook" created="Tue, 25 Jun 2019 14:20:03 +0000"  >&lt;p&gt;Author:&lt;/p&gt;
{&apos;name&apos;: &apos;Jason Chan&apos;, &apos;email&apos;: &apos;jason.chan@10gen.com&apos;, &apos;username&apos;: &apos;jasonjhchan&apos;}
&lt;p&gt;Message: &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-40009&quot; title=&quot;Set/honour initial sync flag at the early stages of initial sync&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-40009&quot;&gt;&lt;del&gt;SERVER-40009&lt;/del&gt;&lt;/a&gt; Honor the initial sync flag when in startup without FCV document&lt;br/&gt;
Branch: master&lt;br/&gt;
&lt;a href=&quot;https://github.com/mongodb/mongo/commit/c0c64c95637f8f0700ac40e89dc39c30ec6f5f41&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;https://github.com/mongodb/mongo/commit/c0c64c95637f8f0700ac40e89dc39c30ec6f5f41&lt;/a&gt;&lt;/p&gt;</comment>
                            <comment id="2281824" author="judah.schvimer" created="Wed, 12 Jun 2019 20:08:49 +0000"  >&lt;p&gt;Correct&lt;/p&gt;</comment>
                            <comment id="2281744" author="jason.chan" created="Wed, 12 Jun 2019 19:29:06 +0000"  >&lt;p&gt;&lt;a href=&quot;https://jira.mongodb.org/secure/ViewProfile.jspa?name=judah.schvimer&quot; class=&quot;user-hover&quot; rel=&quot;judah.schvimer&quot;&gt;judah.schvimer&lt;/a&gt; The ticket says that this ticket affects version 4.0.6. However, since this issue exists in 4.2 and master, am I correct in assuming that this change should go in master and then backported to 4.2 and 4.0?&lt;/p&gt;</comment>
                            <comment id="2177351" author="judah.schvimer" created="Mon, 11 Mar 2019 17:31:42 +0000"  >&lt;p&gt;&lt;a href=&quot;https://jira.mongodb.org/secure/ViewProfile.jspa?name=cory.mintz&quot; class=&quot;user-hover&quot; rel=&quot;cory.mintz&quot;&gt;cory.mintz&lt;/a&gt;, is this important for Atlas?&lt;/p&gt;</comment>
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