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    <title>MongoDB Jira</title>
    <link>https://jira.mongodb.org</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>9.7.1</version>
        <build-number>970001</build-number>
        <build-date>13-04-2023</build-date>
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<item>
            <title>[SERVER-40760] Unable to start mongo after unclean shutdown</title>
                <link>https://jira.mongodb.org/browse/SERVER-40760</link>
                <project id="10000" key="SERVER">Core Server</project>
                    <description>&lt;p&gt;Greetings,&lt;/p&gt;

&lt;p&gt;I have a mongo instance that had ran out of storage room. Is the error recoverable?&lt;/p&gt;

&lt;p&gt;I have attempted to run mongod with the --repair option, but both yield similar results:&lt;/p&gt;

&lt;p&gt;&#160;&lt;br/&gt;
mongod --dbpath /mongodb/data --repair&lt;br/&gt;
2019-04-22T23:05:03.840+1000 I CONTROL &#160;&lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; MongoDB starting : pid=4101 port=27017 dbpath=/mongodb/data 64-bit host=FADAGADB01T.gpaupd.local&lt;br/&gt;
2019-04-22T23:05:03.840+1000 I CONTROL &#160;&lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; db version v3.4.2&lt;br/&gt;
2019-04-22T23:05:03.840+1000 I CONTROL &#160;&lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; git version: 3f76e40c105fc223b3e5aac3e20dcd026b83b38b&lt;br/&gt;
2019-04-22T23:05:03.840+1000 I CONTROL &#160;&lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; OpenSSL version: OpenSSL 1.0.1e-fips 11 Feb 2013&lt;br/&gt;
2019-04-22T23:05:03.840+1000 I CONTROL &#160;&lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; allocator: tcmalloc&lt;br/&gt;
2019-04-22T23:05:03.840+1000 I CONTROL &#160;&lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; modules: none&lt;br/&gt;
2019-04-22T23:05:03.840+1000 I CONTROL &#160;&lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; build environment:&lt;br/&gt;
2019-04-22T23:05:03.840+1000 I CONTROL &#160;&lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; &#160; &#160; distmod: rhel70&lt;br/&gt;
2019-04-22T23:05:03.840+1000 I CONTROL &#160;&lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; &#160; &#160; distarch: x86_64&lt;br/&gt;
2019-04-22T23:05:03.840+1000 I CONTROL &#160;&lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; &#160; &#160; target_arch: x86_64&lt;br/&gt;
2019-04-22T23:05:03.840+1000 I CONTROL &#160;&lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; options: { repair: true, storage: &lt;/p&gt;
{ dbPath: &quot;/mongodb/data&quot; }
&lt;p&gt; }&lt;br/&gt;
2019-04-22T23:05:03.865+1000 I - &#160; &#160; &#160; &#160;&lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; Detected data files in /mongodb/data created by the &apos;wiredTiger&apos; storage engine, so setting the active storage engine to &apos;wiredTiger&apos;.&lt;br/&gt;
2019-04-22T23:05:03.865+1000 I STORAGE &#160;&lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; Detected WT journal files. &#160;Running recovery from last checkpoint.&lt;br/&gt;
2019-04-22T23:05:03.865+1000 I STORAGE &#160;&lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; journal to nojournal transition config: create,cache_size=15576M,session_max=20000,eviction=(threads_max=4),config_base=false,statistics=(fast),log=(enabled=true,archive=true,path=journal,compressor=snappy),file_manager=(close_idle_time=100000),checkpoint=(wait=60,log_size=2GB),statistics_log=(wait=0),&lt;br/&gt;
2019-04-22T23:05:03.877+1000 E STORAGE &#160;&lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; WiredTiger error (0) &lt;span class=&quot;error&quot;&gt;&amp;#91;1555938303:877190&amp;#93;&lt;/span&gt;&lt;span class=&quot;error&quot;&gt;&amp;#91;4101:0x7f9437d11dc0&amp;#93;&lt;/span&gt;, &lt;a href=&quot;file:WiredTiger.wt&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;file:WiredTiger.wt&lt;/a&gt;, connection:&#160;&lt;b&gt;read checksum error for 4096B block at offset 118784: block header checksum of 2037539182 doesn&apos;t match expected checksum of 3071916361&lt;/b&gt;&lt;br/&gt;
2019-04-22T23:05:03.877+1000 E STORAGE &#160;&lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; WiredTiger error (0) &lt;span class=&quot;error&quot;&gt;&amp;#91;1555938303:877238&amp;#93;&lt;/span&gt;&lt;span class=&quot;error&quot;&gt;&amp;#91;4101:0x7f9437d11dc0&amp;#93;&lt;/span&gt;, &lt;a href=&quot;file:WiredTiger.wt&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;file:WiredTiger.wt&lt;/a&gt;, connection:&#160;&lt;b&gt;WiredTiger.wt: encountered an illegal file format or internal value&lt;/b&gt;&lt;br/&gt;
2019-04-22T23:05:03.877+1000 E STORAGE &#160;&lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; WiredTiger error (-31804) &lt;span class=&quot;error&quot;&gt;&amp;#91;1555938303:877254&amp;#93;&lt;/span&gt;&lt;span class=&quot;error&quot;&gt;&amp;#91;4101:0x7f9437d11dc0&amp;#93;&lt;/span&gt;, &lt;a href=&quot;file:WiredTiger.wt&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;file:WiredTiger.wt&lt;/a&gt;, connection: the process must exit and restart: WT_PANIC: WiredTiger library panic&lt;br/&gt;
2019-04-22T23:05:03.877+1000 I - &#160; &#160; &#160; &#160;&lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; Fatal Assertion 28558 at src/mongo/db/storage/wiredtiger/wiredtiger_util.cpp 361&lt;br/&gt;
2019-04-22T23:05:03.877+1000 I - &#160; &#160; &#160; &#160;&lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt;&lt;br/&gt;
&#160;&lt;br/&gt;
***aborting after fassert() failure&lt;br/&gt;
&#160;&lt;br/&gt;
&#160;&lt;br/&gt;
2019-04-22T23:05:03.896+1000 F - &#160; &#160; &#160; &#160;&lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; Got signal: 6 (Aborted).&lt;br/&gt;
&#160;&lt;/p&gt;</description>
                <environment></environment>
        <key id="742796">SERVER-40760</key>
            <summary>Unable to start mongo after unclean shutdown</summary>
                <type id="1" iconUrl="https://jira.mongodb.org/secure/viewavatar?size=xsmall&amp;avatarId=14703&amp;avatarType=issuetype">Bug</type>
                                            <priority id="3" iconUrl="https://jira.mongodb.org/images/icons/priorities/major.svg">Major - P3</priority>
                        <status id="6" iconUrl="https://jira.mongodb.org/images/icons/statuses/closed.png" description="The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.">Closed</status>
                    <statusCategory id="3" key="done" colorName="success"/>
                                    <resolution id="9">Done</resolution>
                                        <assignee username="daniel.hatcher@mongodb.com">Danny Hatcher</assignee>
                                    <reporter username="jlangston">jeff langston</reporter>
                        <labels>
                    </labels>
                <created>Mon, 22 Apr 2019 15:29:18 +0000</created>
                <updated>Tue, 23 Apr 2019 14:28:42 +0000</updated>
                            <resolved>Tue, 23 Apr 2019 14:28:42 +0000</resolved>
                                    <version>3.4.2</version>
                                                    <component>WiredTiger</component>
                                        <votes>0</votes>
                                    <watches>5</watches>
                                                                                                                <comments>
                            <comment id="2221812" author="daniel.hatcher" created="Tue, 23 Apr 2019 14:28:34 +0000"  >&lt;p&gt;Jeff,&lt;/p&gt;

&lt;p&gt;Unfortunately, there&apos;s nothing more we can do in the case. You may wish to try running a &lt;tt&gt;-&lt;del&gt;repair&lt;/tt&gt; with a 4.0.9 &lt;tt&gt;mongod&lt;/tt&gt; binary as that version of &lt;tt&gt;&lt;/del&gt;-repair&lt;/tt&gt; had many improvements but you may encounter other version-related errors.&lt;/p&gt;

&lt;p&gt;In the future, we strongly recommend utilizing a &lt;a href=&quot;https://docs.mongodb.com/manual/replication/&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;replica set&lt;/a&gt; as one node failing can still be recoverable by syncing from another member of the set.&lt;/p&gt;

&lt;p&gt;Danny&lt;/p&gt;</comment>
                            <comment id="2221632" author="jlangston" created="Tue, 23 Apr 2019 11:34:34 +0000"  >&lt;p&gt;Hi Danny,&lt;/p&gt;

&lt;p&gt;Thank you for your response. Unfortunately I still get the following:&lt;/p&gt;

&lt;p&gt;mongod --dbpath /mongodb/data&lt;br/&gt;
 2019-04-23T21:28:51.381+1000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; MongoDB starting : pid=24887 port=27017 dbpath=/mongodb/data 64-bit host=FADAGADB01T.gpaupd.local&lt;br/&gt;
 2019-04-23T21:28:51.381+1000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; db version v3.4.2&lt;br/&gt;
 2019-04-23T21:28:51.381+1000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; git version: 3f76e40c105fc223b3e5aac3e20dcd026b83b38b&lt;br/&gt;
 2019-04-23T21:28:51.381+1000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; OpenSSL version: OpenSSL 1.0.1e-fips 11 Feb 2013&lt;br/&gt;
 2019-04-23T21:28:51.381+1000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; allocator: tcmalloc&lt;br/&gt;
 2019-04-23T21:28:51.381+1000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; modules: none&lt;br/&gt;
 2019-04-23T21:28:51.381+1000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; build environment:&lt;br/&gt;
 2019-04-23T21:28:51.381+1000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; distmod: rhel70&lt;br/&gt;
 2019-04-23T21:28:51.381+1000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; distarch: x86_64&lt;br/&gt;
 2019-04-23T21:28:51.381+1000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; target_arch: x86_64&lt;br/&gt;
 2019-04-23T21:28:51.381+1000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; options: { storage:&lt;/p&gt;

{ dbPath: &quot;/mongodb/data&quot; }

&lt;p&gt;}&lt;br/&gt;
 2019-04-23T21:28:51.407+1000 I - &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; Detected data files in /mongodb/data created by the &apos;wiredTiger&apos; storage engine, so setting the active storage engine to &apos;wiredTiger&apos;.&lt;br/&gt;
 2019-04-23T21:28:51.407+1000 I STORAGE &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; wiredtiger_open config: create,cache_size=15576M,session_max=20000,eviction=(threads_max=4),config_base=false,statistics=(fast),log=(enabled=true,archive=true,path=journal,compressor=snappy),file_manager=(close_idle_time=100000),checkpoint=(wait=60,log_size=2GB),statistics_log=(wait=0),&lt;br/&gt;
 2019-04-23T21:28:51.942+1000 E STORAGE &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; WiredTiger error (0) &lt;span class=&quot;error&quot;&gt;&amp;#91;1556018931:942197&amp;#93;&lt;/span&gt;&lt;span class=&quot;error&quot;&gt;&amp;#91;24887:0x7ff85d4a9dc0&amp;#93;&lt;/span&gt;, &lt;a href=&quot;file:///sizeStorer.wt&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;file:sizeStorer.wt&lt;/a&gt;, txn-recover: read checksum error for 4096B block at offset 290816: block header checksum of 3294406552 doesn&apos;t match expected checksum of 2070625740&lt;br/&gt;
 2019-04-23T21:28:51.942+1000 E STORAGE &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; WiredTiger error (0) &lt;span class=&quot;error&quot;&gt;&amp;#91;1556018931:942274&amp;#93;&lt;/span&gt;&lt;span class=&quot;error&quot;&gt;&amp;#91;24887:0x7ff85d4a9dc0&amp;#93;&lt;/span&gt;, &lt;a href=&quot;file:///sizeStorer.wt&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;file:sizeStorer.wt&lt;/a&gt;, txn-recover: sizeStorer.wt: encountered an illegal file format or internal value&lt;br/&gt;
 2019-04-23T21:28:51.942+1000 E STORAGE &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; WiredTiger error (-31804) &lt;span class=&quot;error&quot;&gt;&amp;#91;1556018931:942290&amp;#93;&lt;/span&gt;&lt;span class=&quot;error&quot;&gt;&amp;#91;24887:0x7ff85d4a9dc0&amp;#93;&lt;/span&gt;, &lt;a href=&quot;file:///sizeStorer.wt&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;file:sizeStorer.wt&lt;/a&gt;, txn-recover: the process must exit and restart: WT_PANIC: WiredTiger library panic&lt;br/&gt;
 2019-04-23T21:28:51.942+1000 I - &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; Fatal Assertion 28558 at src/mongo/db/storage/wiredtiger/wiredtiger_util.cpp 361&lt;br/&gt;
 2019-04-23T21:28:51.942+1000 I - &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;***aborting after fassert() failure&lt;/p&gt;

&lt;p&gt;2019-04-23T21:28:51.963+1000 F - &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; Got signal: 6 (Aborted).&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;

&lt;p&gt;I get a similar response when I run with the --repair option.&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;

&lt;p&gt;Just to make sure I copied the files over I ran md5sum:&lt;/p&gt;

&lt;p&gt;md5sum /mongodb/data/WiredTiger.wt &lt;br/&gt;
662e1a3c19ae33495857e2c5ba86e332 /mongodb/data/WiredTiger.wt&lt;/p&gt;

&lt;p&gt;md5sum /mongodb/repair/WiredTiger.wt &lt;br/&gt;
 662e1a3c19ae33495857e2c5ba86e332 /mongodb/repair/WiredTiger.wt&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;

&lt;p&gt;md5sum /mongodb/data/WiredTiger.turtle &lt;br/&gt;
239e3fbe2f42a6d3b39dc8d165c8a2a1 /mongodb/data/WiredTiger.turtle&lt;/p&gt;

&lt;p&gt;md5sum /mongodb/repair/WiredTiger.turtle &lt;br/&gt;
 239e3fbe2f42a6d3b39dc8d165c8a2a1 /mongodb/repair/WiredTiger.turtle&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;

&lt;p&gt;-Jeff&lt;/p&gt;</comment>
                            <comment id="2221220" author="daniel.hatcher" created="Mon, 22 Apr 2019 21:34:43 +0000"  >&lt;p&gt;Hello Jeff,&lt;/p&gt;

&lt;p&gt;I&apos;ve attached a repair attempt: &lt;span class=&quot;nobr&quot;&gt;&lt;a href=&quot;https://jira.mongodb.org/secure/attachment/214818/214818_repair-attempt.tar&quot; title=&quot;repair-attempt.tar attached to SERVER-40760&quot;&gt;repair-attempt.tar&lt;sup&gt;&lt;img class=&quot;rendericon&quot; src=&quot;https://jira.mongodb.org/images/icons/link_attachment_7.gif&quot; height=&quot;7&quot; width=&quot;7&quot; align=&quot;absmiddle&quot; alt=&quot;&quot; border=&quot;0&quot;/&gt;&lt;/sup&gt;&lt;/a&gt;&lt;/span&gt;. Please extract those files to your &lt;tt&gt;$dbpath&lt;/tt&gt; and attempt to start your &lt;tt&gt;mongod&lt;/tt&gt; process.&lt;/p&gt;

&lt;p&gt;Thanks,&lt;/p&gt;

&lt;p&gt;Danny &lt;/p&gt;</comment>
                    </comments>
                    <attachments>
                            <attachment id="214776" name="WiredTiger.turtle" size="1022" author="jlangston" created="Mon, 22 Apr 2019 13:54:31 +0000"/>
                            <attachment id="214775" name="WiredTiger.wt" size="45387776" author="jlangston" created="Mon, 22 Apr 2019 15:29:02 +0000"/>
                            <attachment id="214818" name="repair-attempt.tar" size="2089085" author="daniel.hatcher@mongodb.com" created="Mon, 22 Apr 2019 21:33:57 +0000"/>
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