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    <title>MongoDB Jira</title>
    <link>https://jira.mongodb.org</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>9.7.1</version>
        <build-number>970001</build-number>
        <build-date>13-04-2023</build-date>
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<item>
            <title>[SERVER-41463] repairDatabasesAndCheckVersion should not hold a lock while calling on StorageRepairObserver::onRepairDone</title>
                <link>https://jira.mongodb.org/browse/SERVER-41463</link>
                <project id="10000" key="SERVER">Core Server</project>
                    <description>&lt;p&gt;&lt;a href=&quot;https://github.com/mongodb/mongo/blob/6cebd61ff8d36e5b61e491419baa4808a98324a6/src/mongo/db/storage/storage_repair_observer.cpp#L102&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;StorageRepairObserver::onRepairDone calls StorageRepairObserver::_invalidateReplConfigIfNeeded &lt;/a&gt;, which &lt;a href=&quot;https://github.com/mongodb/mongo/blob/6cebd61ff8d36e5b61e491419baa4808a98324a6/src/mongo/db/storage/storage_repair_observer.cpp#L149&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;writes out a document&lt;/a&gt; and then &lt;a href=&quot;https://github.com/mongodb/mongo/blob/6cebd61ff8d36e5b61e491419baa4808a98324a6/src/mongo/db/storage/storage_repair_observer.cpp#L151&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;calls waitUntilDurable()&lt;/a&gt;. We must hold a lock for the data write, but should not for the waitUntilDurable() call, as we are trying to add an invariant against holding locks for a potentially long I/O call in waitUntilDurable() in &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-39591&quot; title=&quot;RecoveryUnit::waitUntilDurable() should invariant against callers holding locks&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-39591&quot;&gt;&lt;del&gt;SERVER-39591&lt;/del&gt;&lt;/a&gt;.&lt;/p&gt;

&lt;p&gt;repairDatabasesAndCheckVersion currently holds a global exclusive lock across all of its work. Perhaps elevate the waitUntilDurable() call to the repairDatabasesAndCheckVersion level, or even a level higher, somehow, outside the lock or while the lock is momentarily released.&lt;/p&gt;</description>
                <environment></environment>
        <key id="787594">SERVER-41463</key>
            <summary>repairDatabasesAndCheckVersion should not hold a lock while calling on StorageRepairObserver::onRepairDone</summary>
                <type id="3" iconUrl="https://jira.mongodb.org/secure/viewavatar?size=xsmall&amp;avatarId=14718&amp;avatarType=issuetype">Task</type>
                                            <priority id="3" iconUrl="https://jira.mongodb.org/images/icons/priorities/major.svg">Major - P3</priority>
                        <status id="6" iconUrl="https://jira.mongodb.org/images/icons/statuses/closed.png" description="The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.">Closed</status>
                    <statusCategory id="3" key="done" colorName="success"/>
                                    <resolution id="2">Won&apos;t Fix</resolution>
                                        <assignee username="evgeni.dobranov@mongodb.com">Evgeni Dobranov</assignee>
                                    <reporter username="dianna.hohensee@mongodb.com">Dianna Hohensee</reporter>
                        <labels>
                            <label>execution_intern_2019</label>
                    </labels>
                <created>Mon, 3 Jun 2019 17:50:28 +0000</created>
                <updated>Wed, 9 Oct 2019 17:52:55 +0000</updated>
                            <resolved>Wed, 9 Oct 2019 15:43:25 +0000</resolved>
                                                                                        <votes>0</votes>
                                    <watches>3</watches>
                                                                                                                <comments>
                            <comment id="2473651" author="dianna.hohensee" created="Wed, 9 Oct 2019 13:45:10 +0000"  >&lt;p&gt;That sounds reasonable to me &amp;#8211; the original solution was quite messy. Can you add a comment to &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-39591&quot; title=&quot;RecoveryUnit::waitUntilDurable() should invariant against callers holding locks&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-39591&quot;&gt;&lt;del&gt;SERVER-39591&lt;/del&gt;&lt;/a&gt; saying that we closed this ticket without fix and that we recommend using the invariant you describe to handle this issue?&lt;/p&gt;</comment>
                            <comment id="2472418" author="evgeni.dobranov" created="Tue, 8 Oct 2019 20:39:58 +0000"  >&lt;p&gt;&lt;a href=&quot;https://jira.mongodb.org/secure/ViewProfile.jspa?name=louis.williams&quot; class=&quot;user-hover&quot; rel=&quot;louis.williams&quot;&gt;louis.williams&lt;/a&gt; and I talked about the invariant aimed for by &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-39591&quot; title=&quot;RecoveryUnit::waitUntilDurable() should invariant against callers holding locks&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-39591&quot;&gt;&lt;del&gt;SERVER-39591&lt;/del&gt;&lt;/a&gt; and how it specifically relates to repair.&lt;/p&gt;

&lt;p&gt;Our first thought was to just remove &lt;a href=&quot;https://github.com/mongodb/mongo/blob/master/src/mongo/db/storage/storage_repair_observer.cpp#L164&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;this call to waitUntilDurable()&lt;/a&gt;, but the program could theoretically fail &lt;a href=&quot;https://github.com/mongodb/mongo/blob/master/src/mongo/db/storage/storage_repair_observer.cpp#L112&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;right here&lt;/a&gt;. If we did that, we could get a state where the &quot;repair incomplete file&quot; is removed but the journal is never flushed. This would make it seem like repair succeeded when it didn&apos;t, and the replica set node would have no indication that repair ran and may attempt to rejoin the set. So removing this call to waitUntilDurable() is ruled out.&lt;/p&gt;

&lt;p&gt;We think it&apos;d be best and simplest to add a special case for repair when adding the invariant for&#160;&lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-39591&quot; title=&quot;RecoveryUnit::waitUntilDurable() should invariant against callers holding locks&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-39591&quot;&gt;&lt;del&gt;SERVER-39591&lt;/del&gt;&lt;/a&gt;, rather than messing with the global lock. Perhaps something like &lt;tt&gt;invariant(!opCtx-&amp;gt;lockState()-&amp;gt;isLocked() &lt;b&gt;|| storageGlobalParams.repair&lt;/b&gt;)&lt;/tt&gt;. The reasoning for that and to address the concerns in the original ticket:&lt;/p&gt;
&lt;ol&gt;
	&lt;li&gt;The lock might cause other operations to block, but a server in repair mode typically doesn&apos;t place an emphasis on performance.&lt;/li&gt;
	&lt;li&gt;A server in repair mode doesn&apos;t accept any incoming connections, so a ticketing deadlock wouldn&apos;t be possible under the circumstances for repair.&lt;/li&gt;
&lt;/ol&gt;
</comment>
                            <comment id="2354768" author="dianna.hohensee" created="Thu, 1 Aug 2019 18:35:49 +0000"  >&lt;p&gt;I looked into this a bit. A question that needs to be answered is whether we need to ensure that the StorageRepairObserver::onRepairDone reaches disk if we throw/error in the code that follows the that function call. I do not think it is safe to assume that none of the following code will throw: not future proof even if it turns out to be safe now.&lt;/p&gt;

&lt;p&gt;That answer informs whether we can add a block around the global lock acquisition and then call waitUntilDurable() after everything, if successful.&lt;/p&gt;
&lt;p/&gt;
&lt;div id=&quot;syntaxplugin&quot; class=&quot;syntaxplugin&quot; style=&quot;border: 1px dashed #bbb; border-radius: 5px !important; overflow: auto; max-height: 30em;&quot;&gt;
&lt;table cellspacing=&quot;0&quot; cellpadding=&quot;0&quot; border=&quot;0&quot; width=&quot;100%&quot; style=&quot;font-size: 1em; line-height: 1.4em !important; font-weight: normal; font-style: normal; color: black;&quot;&gt;
		&lt;tbody &gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;  margin-top: 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;foo function() {&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;    returnValue;&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;    {&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;        GlobalLock ...&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;        ...&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;    }&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;    waitUntilDurable()&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;    return returnValue;&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   margin-bottom: 10px;  width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;}&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
			&lt;/tbody&gt;
&lt;/table&gt;
&lt;/div&gt;
&lt;p/&gt;
&lt;p&gt;Alternatively, if it is safe to call waitUntilDurable after any error in repairDatabasesAndCheckVersion, we could avoid the lock scope by doing&lt;/p&gt;
&lt;p/&gt;
&lt;div id=&quot;syntaxplugin&quot; class=&quot;syntaxplugin&quot; style=&quot;border: 1px dashed #bbb; border-radius: 5px !important; overflow: auto; max-height: 30em;&quot;&gt;
&lt;table cellspacing=&quot;0&quot; cellpadding=&quot;0&quot; border=&quot;0&quot; width=&quot;100%&quot; style=&quot;font-size: 1em; line-height: 1.4em !important; font-weight: normal; font-style: normal; color: black;&quot;&gt;
		&lt;tbody &gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;  margin-top: 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;try {&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;    GlobalLock ...&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;    ....&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;} catch (... e) {&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;    waitUntilDurable()&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;    throw e;&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   margin-bottom: 10px;  width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;}&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
			&lt;/tbody&gt;
&lt;/table&gt;
&lt;/div&gt;
&lt;p/&gt;

&lt;p&gt;Otherwise we are left with the solution of just making GlobalLock into boost::optional&amp;lt;GlobalLock&amp;gt; and releasing and reacquiring it around calling onRepairDone() and waitUntilDurable(), which would be elevated to the repairDatabasesAndCheckVersion function level.&lt;/p&gt;</comment>
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