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    <title>MongoDB Jira</title>
    <link>https://jira.mongodb.org</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>9.7.1</version>
        <build-number>970001</build-number>
        <build-date>13-04-2023</build-date>
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<item>
            <title>[SERVER-41888] Shutting down with prepared transaction can invariant during collection validation</title>
                <link>https://jira.mongodb.org/browse/SERVER-41888</link>
                <project id="10000" key="SERVER">Core Server</project>
                    <description>&lt;p&gt;If a test shuts down a node without committing or aborting a prepared transaction, collection validation will run into a prepare conflict. Previously, this would result in a hang. After &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-40936&quot; title=&quot; add an invariant that we do not get a prepare conflict while holding a global, database, or collection MODE_S lock&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-40936&quot;&gt;&lt;del&gt;SERVER-40936&lt;/del&gt;&lt;/a&gt;, this results in an invariant failure. While this is easy to avoid, it contradicts our general philosophy that we should not be able to hit invariants in tests. It might also be worth investigating if there are any other dangers that might come of this.&lt;/p&gt;</description>
                <environment></environment>
        <key id="812213">SERVER-41888</key>
            <summary>Shutting down with prepared transaction can invariant during collection validation</summary>
                <type id="1" iconUrl="https://jira.mongodb.org/secure/viewavatar?size=xsmall&amp;avatarId=14703&amp;avatarType=issuetype">Bug</type>
                                            <priority id="3" iconUrl="https://jira.mongodb.org/images/icons/priorities/major.svg">Major - P3</priority>
                        <status id="6" iconUrl="https://jira.mongodb.org/images/icons/statuses/closed.png" description="The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.">Closed</status>
                    <statusCategory id="3" key="done" colorName="success"/>
                                    <resolution id="13201">Fixed</resolution>
                                        <assignee username="lingzhi.deng@mongodb.com">Lingzhi Deng</assignee>
                                    <reporter username="vesselina.ratcheva@mongodb.com">Vesselina Ratcheva</reporter>
                        <labels>
                    </labels>
                <created>Mon, 24 Jun 2019 16:40:23 +0000</created>
                <updated>Sun, 29 Oct 2023 22:19:38 +0000</updated>
                            <resolved>Mon, 8 Jul 2019 18:40:29 +0000</resolved>
                                                    <fixVersion>4.2.0-rc3</fixVersion>
                    <fixVersion>4.3.1</fixVersion>
                                    <component>Replication</component>
                                        <votes>0</votes>
                                    <watches>6</watches>
                                                                                                                <comments>
                            <comment id="2315980" author="xgen-internal-githook" created="Mon, 8 Jul 2019 21:30:45 +0000"  >&lt;p&gt;Author:&lt;/p&gt;
{&apos;name&apos;: &apos;Lingzhi Deng&apos;, &apos;username&apos;: &apos;ldennis&apos;, &apos;email&apos;: &apos;lingzhi.deng@mongodb.com&apos;}
&lt;p&gt;Message: &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-41888&quot; title=&quot;Shutting down with prepared transaction can invariant during collection validation&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-41888&quot;&gt;&lt;del&gt;SERVER-41888&lt;/del&gt;&lt;/a&gt;: Disallow validate to accept a read concern or afterClusterTime&lt;/p&gt;

&lt;p&gt;(cherry picked from commit 5915e1114d1e45e79642767c8184d514ac957245)&lt;br/&gt;
Branch: v4.2&lt;br/&gt;
&lt;a href=&quot;https://github.com/mongodb/mongo/commit/3ed19ce7c51a84999fa85ba5b644f4972e7037cb&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;https://github.com/mongodb/mongo/commit/3ed19ce7c51a84999fa85ba5b644f4972e7037cb&lt;/a&gt;&lt;/p&gt;</comment>
                            <comment id="2315720" author="xgen-internal-githook" created="Mon, 8 Jul 2019 18:34:42 +0000"  >&lt;p&gt;Author:&lt;/p&gt;
{&apos;name&apos;: &apos;Lingzhi Deng&apos;, &apos;username&apos;: &apos;ldennis&apos;, &apos;email&apos;: &apos;lingzhi.deng@mongodb.com&apos;}
&lt;p&gt;Message: &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-41888&quot; title=&quot;Shutting down with prepared transaction can invariant during collection validation&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-41888&quot;&gt;&lt;del&gt;SERVER-41888&lt;/del&gt;&lt;/a&gt;: Disallow validate to accept a read concern or afterClusterTime&lt;br/&gt;
Branch: master&lt;br/&gt;
&lt;a href=&quot;https://github.com/mongodb/mongo/commit/5915e1114d1e45e79642767c8184d514ac957245&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;https://github.com/mongodb/mongo/commit/5915e1114d1e45e79642767c8184d514ac957245&lt;/a&gt;&lt;/p&gt;</comment>
                            <comment id="2301477" author="vesselina.ratcheva" created="Thu, 27 Jun 2019 21:07:00 +0000"  >&lt;p&gt;I left some relevant TODOs in a test I wrote, in &lt;a href=&quot;https://github.com/mongodb/mongo/blob/644fc54e18049e0737ae1621aec5eb7afbe1934f/jstests/replsets/libs/prepare_standalone_replication_recovery.js#L88-L104&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;this section&lt;/a&gt;.&lt;/p&gt;</comment>
                            <comment id="2298296" author="judah.schvimer" created="Wed, 26 Jun 2019 15:08:53 +0000"  >&lt;p&gt;We &lt;a href=&quot;https://docs.mongodb.com/manual/reference/command/validate/&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;do not document&lt;/a&gt; &lt;tt&gt;validate&lt;/tt&gt; taking a read concern, so this isn&apos;t an API change. &lt;a href=&quot;https://jira.mongodb.org/secure/ViewProfile.jspa?name=alyson.cabral&quot; class=&quot;user-hover&quot; rel=&quot;alyson.cabral&quot;&gt;alyson.cabral&lt;/a&gt;, do you see any problems with not allowing &lt;tt&gt;validate&lt;/tt&gt; to accept a read concern or &lt;tt&gt;afterClusterTime&lt;/tt&gt;?&lt;/p&gt;</comment>
                            <comment id="2297770" author="geert.bosch" created="Wed, 26 Jun 2019 03:07:49 +0000"  >&lt;p&gt;I think it is OK for validate to ignore prepare conflicts: we&apos;d ignore the same conflict on both the collection and all indexes, so everything should still be consistent. It is expected that the result of validate does not include uncommitted transactions.&lt;/p&gt;</comment>
                            <comment id="2297765" author="geert.bosch" created="Wed, 26 Jun 2019 03:02:01 +0000"  >&lt;p&gt;One of the reasons validate acquires an X lock is that the storage engine (at least in the case of WiredTiger) may not be able to actually do a full validation if there still are open cursors on the collection. Another reason is that validate may actually write to update some stats, such as document count and storage size, that may not be tracked perfectly in presence of failures and rollbacks, but are recomputed anyway during validation.&lt;/p&gt;

&lt;p&gt;Rather than trying to improve this, I think it is better to focus on background validation and eventually making that the default and only way to validate collections.&lt;/p&gt;</comment>
                            <comment id="2295397" author="judah.schvimer" created="Mon, 24 Jun 2019 18:22:03 +0000"  >&lt;p&gt;The investigation in &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-40723&quot; title=&quot;Deadlock between S lock acquisition on secondary and prepare conflict&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-40723&quot;&gt;&lt;del&gt;SERVER-40723&lt;/del&gt;&lt;/a&gt; didn&apos;t cover X locks. I don&apos;t really remember why not, but I think it was because I assumed we couldn&apos;t take them on secondaries. Doing something similar to &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-40938&quot; title=&quot;Add tests that dbhash and map-reduce do not accept a read concern&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-40938&quot;&gt;&lt;del&gt;SERVER-40938&lt;/del&gt;&lt;/a&gt; feels appropriate for this ticket. &lt;/p&gt;

&lt;p&gt;&lt;a href=&quot;https://jira.mongodb.org/secure/ViewProfile.jspa?name=geert.bosch&quot; class=&quot;user-hover&quot; rel=&quot;geert.bosch&quot;&gt;geert.bosch&lt;/a&gt;, why does validate acquire an X lock instead of an S lock? Is it ok for it to ignore prepare conflicts? Are there any other X locks we should be worried about? Is it a problem for validate to not accept &lt;tt&gt;afterClusterTime&lt;/tt&gt;?&lt;/p&gt;</comment>
                            <comment id="2295068" author="bruce.lucas@10gen.com" created="Mon, 24 Jun 2019 16:58:13 +0000"  >&lt;p&gt;Sounds like this is something a customer could encounter as well, and hitting an invariant during shutdown would not be an optimal behavior from a customer perspective.&lt;/p&gt;</comment>
                    </comments>
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            <issuekey id="834918">SERVER-42076</issuekey>
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            <issuekey id="741394">SERVER-40723</issuekey>
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            <issuekey id="1025683">SERVER-44837</issuekey>
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&lt;div id=&quot;syntaxplugin&quot; class=&quot;syntaxplugin&quot; style=&quot;border: 1px dashed #bbb; border-radius: 5px !important; overflow: auto; max-height: 30em;&quot;&gt;
&lt;table cellspacing=&quot;0&quot; cellpadding=&quot;0&quot; border=&quot;0&quot; width=&quot;100%&quot; style=&quot;font-size: 1em; line-height: 1.4em !important; font-weight: normal; font-style: normal; color: black;&quot;&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;  margin-top: 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;--- a/jstests/replsets/shutdown_with_prepared_transaction.js&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;+++ b/jstests/replsets/shutdown_with_prepared_transaction.js&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;@@ -34,5 +34,5 @@&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;     jsTestLog(&lt;/span&gt;&lt;span style=&quot;color: blue; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;&quot;Shutting down the set with the transaction still in prepare state&quot;&lt;/span&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;);&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;     &lt;/span&gt;&lt;span style=&quot;color: #008200; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;// Skip validation during ReplSetTest cleanup since validate() will block behind the prepared&lt;/span&gt;&lt;/pre&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;     &lt;/span&gt;&lt;span style=&quot;color: #008200; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;// transaction&apos;s locks when trying to take a collection X lock.&lt;/span&gt;&lt;/pre&gt;
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				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;-    replTest.stopSet(&lt;/span&gt;&lt;span style=&quot;color: #006699; font-weight: bold; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;null&lt;/span&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; &lt;/span&gt;&lt;span style=&quot;color: #008200; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;/*signal*/&lt;/span&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;, &lt;/span&gt;&lt;span style=&quot;color: #006699; font-weight: bold; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;false&lt;/span&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; &lt;/span&gt;&lt;span style=&quot;color: #008200; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;/*forRestart*/&lt;/span&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;, {skipValidation: &lt;/span&gt;&lt;span style=&quot;color: #006699; font-weight: bold; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;true&lt;/span&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;});&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;+    replTest.stopSet(&lt;/span&gt;&lt;span style=&quot;color: #006699; font-weight: bold; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;null&lt;/span&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; &lt;/span&gt;&lt;span style=&quot;color: #008200; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;/*signal*/&lt;/span&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;, &lt;/span&gt;&lt;span style=&quot;color: #006699; font-weight: bold; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;false&lt;/span&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; &lt;/span&gt;&lt;span style=&quot;color: #008200; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;/*forRestart*/&lt;/span&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;);&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;   margin-bottom: 10px;  width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; }());&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
			&lt;/tbody&gt;
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