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    <title>MongoDB Jira</title>
    <link>https://jira.mongodb.org</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>9.7.1</version>
        <build-number>970001</build-number>
        <build-date>13-04-2023</build-date>
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<item>
            <title>[SERVER-4201] CLONE - Unable to shut down or kill -9 monogd</title>
                <link>https://jira.mongodb.org/browse/SERVER-4201</link>
                <project id="10000" key="SERVER">Core Server</project>
                    <description>&lt;p&gt;I created a replication set by adding two servers to an existing server with about 250 GB and having it replicate the data. After being in recovery state for a while we see the new server go into a state were CPU usage becomes very low, but the load-average goes to about 200 or more.&lt;/p&gt;

&lt;p&gt;At this point is it impossible to shut down or kill mongod. kill -9 has no effect.&lt;/p&gt;

&lt;p&gt;I also noticed that that I cannot cat any file in /proc/&amp;lt;pid&amp;gt; belonging to the mongod process.&lt;/p&gt;</description>
                <environment>Linux mbl-mdb01 2.6.32.10-90.fc12.x86_64 #1 SMP Tue Mar 23 09:47:08 UTC 2010 x86_64 x86_64 x86_64 GNU/Linux&lt;br/&gt;
Fedora release 12 (Constantine)</environment>
        <key id="24441">SERVER-4201</key>
            <summary>CLONE - Unable to shut down or kill -9 monogd</summary>
                <type id="1" iconUrl="https://jira.mongodb.org/secure/viewavatar?size=xsmall&amp;avatarId=14703&amp;avatarType=issuetype">Bug</type>
                                            <priority id="3" iconUrl="https://jira.mongodb.org/images/icons/priorities/major.svg">Major - P3</priority>
                        <status id="6" iconUrl="https://jira.mongodb.org/images/icons/statuses/closed.png" description="The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.">Closed</status>
                    <statusCategory id="3" key="done" colorName="success"/>
                                    <resolution id="5">Cannot Reproduce</resolution>
                                        <assignee username="-1">Unassigned</assignee>
                                    <reporter username="jfk@jolira.com">Joachim Kainz</reporter>
                        <labels>
                    </labels>
                <created>Thu, 3 Nov 2011 13:20:53 +0000</created>
                <updated>Fri, 30 Mar 2012 14:37:17 +0000</updated>
                            <resolved>Fri, 11 Nov 2011 14:09:32 +0000</resolved>
                                    <version>1.8.3</version>
                    <version>2.0.0</version>
                    <version>2.0.1</version>
                                                                        <votes>0</votes>
                                    <watches>2</watches>
                                                                                                                <comments>
                            <comment id="66188" author="eliot" created="Fri, 11 Nov 2011 14:09:32 +0000"  >&lt;p&gt;Let us know if it comes back after upgrading or if you think its a mongo issue.&lt;/p&gt;</comment>
                            <comment id="64523" author="jfk@jolira.com" created="Thu, 3 Nov 2011 17:42:41 +0000"  >&lt;p&gt;Yes, I do. &lt;/p&gt;

&lt;p&gt;Just found out that the kernel on the machines where we are running mongo has not be patched in about 4 years.&lt;/p&gt;

&lt;p&gt;I am trying to get my datacenter guys to bring the kernel up-to-date. I let you know if it reoccurs after patching. I personally believe it will not reoccur.&lt;/p&gt;
</comment>
                            <comment id="64479" author="eliot" created="Thu, 3 Nov 2011 15:45:59 +0000"  >&lt;p&gt;Are you doing the kill as the mongod user or root?&lt;/p&gt;</comment>
                            <comment id="64449" author="jfk@jolira.com" created="Thu, 3 Nov 2011 13:24:56 +0000"  >&lt;p&gt;top - 06:24:19 up 14:23,  1 user,  load average: 11.05, 8.97, 6.00&lt;br/&gt;
Tasks: 287 total,   1 running, 286 sleeping,   0 stopped,   0 zombie&lt;br/&gt;
Cpu(s):  1.1%us,  0.2%sy,  0.0%ni, 85.1%id, 13.7%wa,  0.0%hi,  0.0%si,  0.0%st&lt;br/&gt;
Mem:  33084004k total, 32781156k used,   302848k free,    21404k buffers&lt;br/&gt;
Swap: 15999992k total,    68988k used, 15931004k free, 29540580k cached&lt;/p&gt;

&lt;p&gt;  PID USER      PR  NI  VIRT  RES  SHR S %CPU %MEM    TIME+  COMMAND                                                                                                      &lt;br/&gt;
 5971 mobile    20   0  666m  74m 2452 S  2.7  0.2  30:14.46 dispatcher.js                                                                                                &lt;br/&gt;
 9876 mobile    20   0  636m  14m 5360 S  0.7  0.0   0:07.63 metric-loader.j                                                                                              &lt;br/&gt;
 6139 mongod    20   0  548g  28g  28g D  0.3 89.5  91:02.42 mongod                                                                                                       &lt;br/&gt;
 9799 mobile    20   0  636m  15m 5360 S  0.3  0.0   0:07.98 metric-loader.j                                                                                              &lt;br/&gt;
 9829 mobile    20   0  636m  15m 5372 S  0.3  0.0   0:07.68 metric-loader.j                                                                                              &lt;br/&gt;
 9833 mobile    20   0  636m  15m 5360 S  0.3  0.0   0:07.72 metric-loader.j                                                                                              &lt;br/&gt;
 9836 mobile    20   0  636m  15m 5360 S  0.3  0.0   0:08.08 metric-loader.j                                                                                              &lt;br/&gt;
 9839 mobile    20   0  636m  15m 5360 S  0.3  0.0   0:07.76 metric-loader.j                                                                                              &lt;br/&gt;
 9845 mobile    20   0  636m  15m 5360 S  0.3  0.0   0:07.88 metric-loader.j                                                                                              &lt;br/&gt;
 9849 mobile    20   0  636m  14m 5360 S  0.3  0.0   0:07.67 metric-loader.j                                                                                              &lt;br/&gt;
 9854 mobile    20   0  636m  15m 5360 S  0.3  0.0   0:07.76 metric-loader.j                                                                                              &lt;br/&gt;
 9856 mobile    20   0  636m  15m 5360 S  0.3  0.0   0:07.84 metric-loader.j                                                                                              &lt;br/&gt;
 9863 mobile    20   0  636m  15m 5360 S  0.3  0.0   0:07.41 metric-loader.j                                                                                              &lt;br/&gt;
 9866 mobile    20   0  636m  17m 5372 S  0.3  0.1   0:07.68 metric-loader.j                                                                                              &lt;br/&gt;
 9877 mobile    20   0  636m  18m 5360 S  0.3  0.1   0:07.62 metric-loader.j                                                                                              &lt;br/&gt;
 9882 mobile    20   0  636m  14m 5360 S  0.3  0.0   0:07.61 metric-loader.j                                                                                              &lt;br/&gt;
 9888 mobile    20   0  636m  15m 5372 S  0.3  0.0   0:08.10 metric-loader.j                                                                                              &lt;br/&gt;
 9899 mobile    20   0  636m  16m 5360 S  0.3  0.1   0:07.80 metric-loader.j                                                                                              &lt;br/&gt;
 9915 mobile    20   0  636m  16m 5360 S  0.3  0.0   0:07.70 metric-loader.j                                                                                              &lt;br/&gt;
 9916 mobile    20   0  636m  15m 5372 S  0.3  0.0   0:07.93 metric-loader.j                                                                                              &lt;br/&gt;
 9921 mobile    20   0  636m  16m 5372 S  0.3  0.0   0:07.47 metric-loader.j                                                                                              &lt;br/&gt;
 9927 mobile    20   0  636m  18m 5360 S  0.3  0.1   0:07.56 metric-loader.j                                                                                              &lt;br/&gt;
 9936 mobile    20   0  636m  15m 5360 S  0.3  0.0   0:07.87 metric-loader.j                                                                                              &lt;br/&gt;
 9938 mobile    20   0  636m  18m 5360 S  0.3  0.1   0:07.71 metric-loader.j                                                                                              &lt;br/&gt;
 9951 mobile    20   0  636m  14m 5360 S  0.3  0.0   0:07.77 metric-loader.j                                                                                              &lt;br/&gt;
29944 mobile    20   0 15040 1304  864 R  0.3  0.0   0:00.07 top                                                                                                          &lt;br/&gt;
    1 root      20   0  4128  452  356 S  0.0  0.0   0:00.99 init                                                                                                         &lt;br/&gt;
    2 root      20   0     0    0    0 S  0.0  0.0   0:00.00 kthreadd                                                                                                     &lt;br/&gt;
    3 root      RT   0     0    0    0 S  0.0  0.0   0:00.00 migration/0                                                                                                  &lt;br/&gt;
    4 root      20   0     0    0    0 S  0.0  0.0   0:00.09 ksoftirqd/0                                                                                                  &lt;br/&gt;
    5 root      RT   0     0    0    0 S  0.0  0.0   0:00.00 watchdog/0                                                                                                   &lt;br/&gt;
    6 root      RT   0     0    0    0 S  0.0  0.0   0:00.10 migration/1                                                                                                  &lt;br/&gt;
    7 root      20   0     0    0    0 S  0.0  0.0   0:00.36 ksoftirqd/1                                                                                                  &lt;br/&gt;
    8 root      RT   0     0    0    0 S  0.0  0.0   0:00.00 watchdog/1                        &lt;/p&gt;</comment>
                            <comment id="64448" author="jfk@jolira.com" created="Thu, 3 Nov 2011 13:22:59 +0000"  >&lt;p&gt;$ iostat&lt;br/&gt;
Linux 2.6.32.10-90.fc12.x86_64 (mbl-mdb02) 	11/03/2011 	&lt;em&gt;x86_64&lt;/em&gt;	(8 CPU)&lt;/p&gt;

&lt;p&gt;avg-cpu:  %user   %nice %system %iowait  %steal   %idle&lt;br/&gt;
           2.40    0.00    0.73   16.31    0.00   80.57&lt;/p&gt;

&lt;p&gt;Device:            tps   Blk_read/s   Blk_wrtn/s   Blk_read   Blk_wrtn&lt;br/&gt;
sda              52.07        12.76     10989.29     659801  568168886&lt;/p&gt;</comment>
                            <comment id="64447" author="jfk@jolira.com" created="Thu, 3 Nov 2011 13:22:22 +0000"  >&lt;p&gt;$ iostat&lt;br/&gt;
Linux 2.6.32.10-90.fc12.x86_64 (mbl-mdb02) 	11/03/2011 	&lt;em&gt;x86_64&lt;/em&gt;	(8 CPU)&lt;/p&gt;

&lt;p&gt;avg-cpu:  %user   %nice %system %iowait  %steal   %idle&lt;br/&gt;
           2.40    0.00    0.73   16.28    0.00   80.60&lt;/p&gt;

&lt;p&gt;Device:            tps   Blk_read/s   Blk_wrtn/s   Blk_read   Blk_wrtn&lt;br/&gt;
sda              52.29        12.82     11037.23     659785  568168206&lt;/p&gt;</comment>
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