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    <title>MongoDB Jira</title>
    <link>https://jira.mongodb.org</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>9.7.1</version>
        <build-number>970001</build-number>
        <build-date>13-04-2023</build-date>
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<item>
            <title>[SERVER-42072] Server refusing to come up (with possible data issues)</title>
                <link>https://jira.mongodb.org/browse/SERVER-42072</link>
                <project id="10000" key="SERVER">Core Server</project>
                    <description>&lt;p&gt;MongoDB server is not coming up during restart. The logs and data files are attached&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;

&lt;p&gt;2019-07-02T08:14:49.548+0000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;main&amp;#93;&lt;/span&gt; ***** SERVER RESTARTED *****&lt;br/&gt;
2019-07-02T08:14:49.573+0000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; MongoDB starting : pid=3901 port=27017 dbpath=/mongodb_data 64-bit host=vm74861095d3&lt;br/&gt;
2019-07-02T08:14:49.573+0000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; db version v4.0.1&lt;br/&gt;
2019-07-02T08:14:49.573+0000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; git version: 54f1582fc6eb01de4d4c42f26fc133e623f065fb&lt;br/&gt;
2019-07-02T08:14:49.573+0000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; OpenSSL version: OpenSSL 1.0.1e-fips 11 Feb 2013&lt;br/&gt;
2019-07-02T08:14:49.573+0000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; allocator: tcmalloc&lt;br/&gt;
2019-07-02T08:14:49.573+0000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; modules: none&lt;br/&gt;
2019-07-02T08:14:49.573+0000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; build environment:&lt;br/&gt;
2019-07-02T08:14:49.573+0000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; distmod: rhel62&lt;br/&gt;
2019-07-02T08:14:49.573+0000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; distarch: x86_64&lt;br/&gt;
2019-07-02T08:14:49.573+0000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; target_arch: x86_64&lt;br/&gt;
2019-07-02T08:14:49.573+0000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; options: { config: &quot;/etc/mongod.conf&quot;, net: { bindIp: &quot;0.0.0.0&quot;, port: 27017, ssl: &lt;/p&gt;
{ PEMKeyFile: &quot;/etc/ssl/mongodb.pem&quot;, allowInvalidCertificates: true, allowInvalidHostnames: true, mode: &quot;requireSSL&quot; }
&lt;p&gt; }, processManagement: { fork: true, pidFilePath: &quot;/var/run/mongodb/mongod.pid&quot; }, security: { authorization: &quot;enabled&quot; }, storage: { dbPath: &quot;/mongodb_data&quot;, engine: &quot;wiredTiger&quot;, journal: &lt;/p&gt;
{ enabled: true }
&lt;p&gt;, wiredTiger: { collectionConfig: &lt;/p&gt;
{ blockCompressor: &quot;none&quot; }
&lt;p&gt; } }, systemLog: { destination: &quot;file&quot;, logAppend: true, path: &quot;/var/log/mongodb/mongod.log&quot; } }&lt;br/&gt;
2019-07-02T08:14:49.645+0000 I STORAGE &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; wiredtiger_open config: create,cache_size=256M,session_max=20000,eviction=(threads_min=4,threads_max=4),config_base=false,statistics=(fast),log=(enabled=true,archive=true,path=journal,compressor=snappy),file_manager=(close_idle_time=100000),statistics_log=(wait=0),verbose=(recovery_progress),&lt;br/&gt;
2019-07-02T08:14:51.056+0000 I STORAGE &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; WiredTiger message &lt;span class=&quot;error&quot;&gt;&amp;#91;1562055291:56230&amp;#93;&lt;/span&gt;&lt;span class=&quot;error&quot;&gt;&amp;#91;3901:0x7f1cdb04ea60&amp;#93;&lt;/span&gt;, txn-recover: Main recovery loop: starting at 8/41216&lt;br/&gt;
2019-07-02T08:14:51.056+0000 I STORAGE &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; WiredTiger message &lt;span class=&quot;error&quot;&gt;&amp;#91;1562055291:56687&amp;#93;&lt;/span&gt;&lt;span class=&quot;error&quot;&gt;&amp;#91;3901:0x7f1cdb04ea60&amp;#93;&lt;/span&gt;, txn-recover: Recovering log 8 through 9&lt;br/&gt;
2019-07-02T08:14:51.523+0000 I STORAGE &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; WiredTiger message &lt;span class=&quot;error&quot;&gt;&amp;#91;1562055291:523216&amp;#93;&lt;/span&gt;&lt;span class=&quot;error&quot;&gt;&amp;#91;3901:0x7f1cdb04ea60&amp;#93;&lt;/span&gt;, &lt;a href=&quot;file:collection-12--1784503479178086004.wt&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;file:collection-12--1784503479178086004.wt&lt;/a&gt;, txn-recover: Recovering log 9 through 9&lt;br/&gt;
2019-07-02T08:14:51.589+0000 I STORAGE &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; WiredTiger message &lt;span class=&quot;error&quot;&gt;&amp;#91;1562055291:589212&amp;#93;&lt;/span&gt;&lt;span class=&quot;error&quot;&gt;&amp;#91;3901:0x7f1cdb04ea60&amp;#93;&lt;/span&gt;, &lt;a href=&quot;file:collection-12--1784503479178086004.wt&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;file:collection-12--1784503479178086004.wt&lt;/a&gt;, txn-recover: Set global recovery timestamp: 5d1b05cc00000001&lt;br/&gt;
2019-07-02T08:14:51.661+0000 I RECOVERY &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; WiredTiger recoveryTimestamp. Ts: Timestamp(1562052044, 1)&lt;br/&gt;
2019-07-02T08:14:51.661+0000 I STORAGE &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; Triggering the first stable checkpoint. Initial Data: Timestamp(1562052044, 1) PrevStable: Timestamp(0, 0) CurrStable: Timestamp(1562052044, 1)&lt;br/&gt;
2019-07-02T08:14:52.495+0000 I STORAGE &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; Starting WiredTigerRecordStoreThread local.oplog.rs&lt;br/&gt;
2019-07-02T08:14:52.496+0000 I STORAGE &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; The size storer reports that the oplog contains 182 records totaling to 20587 bytes&lt;br/&gt;
2019-07-02T08:14:52.496+0000 I STORAGE &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; Scanning the oplog to determine where to place markers for truncation&lt;br/&gt;
2019-07-02T08:14:53.100+0000 F - &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; Fatal Assertion 34433 at src/mongo/db/storage/wiredtiger/wiredtiger_record_store.cpp 637&lt;br/&gt;
2019-07-02T08:14:53.100+0000 F - &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;***aborting after fassert() failure&lt;/p&gt;</description>
                <environment></environment>
        <key id="834734">SERVER-42072</key>
            <summary>Server refusing to come up (with possible data issues)</summary>
                <type id="1" iconUrl="https://jira.mongodb.org/secure/viewavatar?size=xsmall&amp;avatarId=14703&amp;avatarType=issuetype">Bug</type>
                                            <priority id="3" iconUrl="https://jira.mongodb.org/images/icons/priorities/major.svg">Major - P3</priority>
                        <status id="6" iconUrl="https://jira.mongodb.org/images/icons/statuses/closed.png" description="The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.">Closed</status>
                    <statusCategory id="3" key="done" colorName="success"/>
                                    <resolution id="9">Done</resolution>
                                        <assignee username="daniel.hatcher@mongodb.com">Danny Hatcher</assignee>
                                    <reporter username="dharshanr@scalegrid.net">Dharshan Rangegowda</reporter>
                        <labels>
                    </labels>
                <created>Wed, 3 Jul 2019 18:21:45 +0000</created>
                <updated>Mon, 29 Jul 2019 20:53:29 +0000</updated>
                            <resolved>Mon, 29 Jul 2019 20:53:29 +0000</resolved>
                                    <version>4.0.10</version>
                                                                        <votes>0</votes>
                                    <watches>6</watches>
                                                                                                                <comments>
                            <comment id="2348900" author="daniel.hatcher" created="Mon, 29 Jul 2019 20:53:29 +0000"  >&lt;p&gt;Closing due to lack of response.&lt;/p&gt;</comment>
                            <comment id="2315632" author="daniel.hatcher" created="Mon, 8 Jul 2019 17:44:25 +0000"  >&lt;p&gt;Hello Dharshan,&lt;/p&gt;

&lt;p&gt;Could you please download the 4.0.10 binaries and use them to start the server with the &lt;tt&gt;--repair&lt;/tt&gt; flag? We&apos;ve made improvements to the repair process in 4.0.10 that may resolve this issue.&lt;/p&gt;</comment>
                    </comments>
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                            <attachment id="223129" name="data.zip" size="695559" author="dharshanr@scalegrid.net" created="Wed, 3 Jul 2019 18:21:23 +0000"/>
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