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    <title>MongoDB Jira</title>
    <link>https://jira.mongodb.org</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>9.7.1</version>
        <build-number>970001</build-number>
        <build-date>13-04-2023</build-date>
    </build-info>


<item>
            <title>[SERVER-49412] file:WiredTiger.wt read checksum error, mongodb won&apos;t start</title>
                <link>https://jira.mongodb.org/browse/SERVER-49412</link>
                <project id="10000" key="SERVER">Core Server</project>
                    <description>&lt;p&gt;Hi, unfortuneatly I am having issues getting a mongodb started back up after a system failure.&lt;br/&gt;
I have tried the mongod --repair, as well as using the wt tool to check, however they both report an invalid checksuom on the WiredTiger.wt file.&lt;br/&gt;
I was hoping you ad a better way of attempting recovery on these?&lt;/p&gt;

&lt;p&gt;Thank you, logs below:&lt;/p&gt;

&lt;p&gt;2020-07-09T21:16:03.399+0000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; MongoDB starting : pid=29 port=27017 dbpath=/var/lib/mongodb/data 64-bit host=mongodb-1-wnfnn&lt;br/&gt;
2020-07-09T21:16:03.399+0000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; db version v3.4.9&lt;br/&gt;
2020-07-09T21:16:03.399+0000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; git version: 876ebee8c7dd0e2d992f36a848ff4dc50ee6603e&lt;br/&gt;
2020-07-09T21:16:03.399+0000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; OpenSSL version: OpenSSL 1.0.2k-fips 26 Jan 2017&lt;br/&gt;
2020-07-09T21:16:03.399+0000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; allocator: tcmalloc&lt;br/&gt;
2020-07-09T21:16:03.399+0000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; modules: none&lt;br/&gt;
2020-07-09T21:16:03.399+0000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; build environment:&lt;br/&gt;
2020-07-09T21:16:03.399+0000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; distarch: x86_64&lt;br/&gt;
2020-07-09T21:16:03.399+0000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; target_arch: x86_64&lt;br/&gt;
2020-07-09T21:16:03.399+0000 I CONTROL &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; options: { config: &quot;/etc/mongod.conf&quot;, net: &lt;/p&gt;
{ bindIp: &quot;localhost&quot;, port: 27017 }
&lt;p&gt;, replication: { oplogSizeMB: 64 }, security: { authorization: &quot;disabled&quot; }, storage: { dbPath: &quot;/var/lib/mongodb/data&quot;, wiredTiger: { engineConfig: &lt;/p&gt;
{ cacheSizeGB: 1.0 }
&lt;p&gt; } }, systemLog: { quiet: true } }&lt;br/&gt;
MongoDB shell version v3.4.9&lt;br/&gt;
2020-07-09T21:16:03.409+0000 I - &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; Detected data files in /var/lib/mongodb/data created by the &apos;wiredTiger&apos; storage engine, so setting the active storage engine to &apos;wiredTiger&apos;.&lt;br/&gt;
2020-07-09T21:16:03.411+0000 I STORAGE &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; wiredtiger_open config: create,cache_size=1024M,session_max=20000,eviction=(threads_min=4,threads_max=4),config_base=false,statistics=(fast),log=(enabled=true,archive=true,path=journal,compressor=snappy),file_manager=(close_idle_time=100000),checkpoint=(wait=60,log_size=2GB),statistics_log=(wait=0),&lt;br/&gt;
connecting to: mongodb://127.0.0.1:27017/localhost&lt;br/&gt;
2020-07-09T21:16:03.458+0000 W NETWORK &lt;span class=&quot;error&quot;&gt;&amp;#91;thread1&amp;#93;&lt;/span&gt; Failed to connect to 127.0.0.1:27017, in(checking socket for error after poll), reason: Connection refused&lt;br/&gt;
2020-07-09T21:16:03.458+0000 E QUERY &lt;span class=&quot;error&quot;&gt;&amp;#91;thread1&amp;#93;&lt;/span&gt; Error: couldn&apos;t connect to server 127.0.0.1:27017, connection attempt failed :&lt;br/&gt;
connect@src/mongo/shell/mongo.js:237:13&lt;br/&gt;
@(connect):1:6&lt;br/&gt;
2020-07-09T21:16:03.465+0000 E STORAGE &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; WiredTiger error (0) &lt;span class=&quot;error&quot;&gt;&amp;#91;1594329363:465773&amp;#93;&lt;/span&gt;&lt;span class=&quot;error&quot;&gt;&amp;#91;29:0x7f47e1b69e80&amp;#93;&lt;/span&gt;, &lt;a href=&quot;file:WiredTiger.wt&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;file:WiredTiger.wt&lt;/a&gt;, connection: read checksum error for 4096B block at offset 57344: block header checksum of 979725410 doesn&apos;t match expected checksum of 793883532&lt;br/&gt;
2020-07-09T21:16:03.465+0000 E STORAGE &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; WiredTiger error (0) &lt;span class=&quot;error&quot;&gt;&amp;#91;1594329363:465887&amp;#93;&lt;/span&gt;&lt;span class=&quot;error&quot;&gt;&amp;#91;29:0x7f47e1b69e80&amp;#93;&lt;/span&gt;, &lt;a href=&quot;file:WiredTiger.wt&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;file:WiredTiger.wt&lt;/a&gt;, connection: WiredTiger.wt: encountered an illegal file format or internal value&lt;br/&gt;
2020-07-09T21:16:03.465+0000 E STORAGE &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; WiredTiger error (-31804) &lt;span class=&quot;error&quot;&gt;&amp;#91;1594329363:465909&amp;#93;&lt;/span&gt;&lt;span class=&quot;error&quot;&gt;&amp;#91;29:0x7f47e1b69e80&amp;#93;&lt;/span&gt;, &lt;a href=&quot;file:WiredTiger.wt&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;file:WiredTiger.wt&lt;/a&gt;, connection: the process must exit and restart: WT_PANIC: WiredTiger library panic&lt;br/&gt;
2020-07-09T21:16:03.465+0000 I - &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; Fatal Assertion 28558 at src/mongo/db/storage/wiredtiger/wiredtiger_util.cpp 361&lt;br/&gt;
2020-07-09T21:16:03.465+0000 I - &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;***aborting after fassert() failure&lt;/p&gt;


&lt;p&gt;exception: connect failed&lt;br/&gt;
2020-07-09T21:16:03.470+0000 F - &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; Got signal: 6 (Aborted).&lt;/p&gt;

&lt;p&gt;0x56354b05735a 0x56354b056699 0x56354b056b66 0x7f47de49e6d0 0x7f47de0f8277 0x7f47de0f9968 0x56354a2b745b 0x56354ad5cc26 0x56354a2c077a 0x56354a2c0991 0x56354a2c0bef 0x56354b84887f 0x56354b848ddb 0x56354b845435 0x56354b849fa7 0x56354b863a35 0x56354b89d3f3 0x56354b928747 0x56354b928c96 0x56354b928f5c 0x56354b8abb31 0x56354b91e9f8 0x56354b8e82be 0x56354b8e83ab 0x56354b899777 0x56354ad42031 0x56354ad39fc6 0x56354ac20517 0x56354a29d984 0x56354a2c1e44 0x7f47de0e4445 0x56354a31f615&lt;br/&gt;
----- BEGIN BACKTRACE -----&lt;/p&gt;
{&quot;backtrace&quot;:[\{&quot;b&quot;:&quot;56354A0B4000&quot;,&quot;o&quot;:&quot;FA335A&quot;}
&lt;p&gt;,{&quot;b&quot;:&quot;56354A0B4000&quot;,&quot;o&quot;:&quot;FA2699&quot;},{&quot;b&quot;:&quot;56354A0B4000&quot;,&quot;o&quot;:&quot;FA2B66&quot;},{&quot;b&quot;:&quot;7F47DE48F000&quot;,&quot;o&quot;:&quot;F6D0&quot;},{&quot;b&quot;:&quot;7F47DE0C2000&quot;,&quot;o&quot;:&quot;36277&quot;,&quot;s&quot;:&quot;gsignal&quot;},{&quot;b&quot;:&quot;7F47DE0C2000&quot;,&quot;o&quot;:&quot;37968&quot;,&quot;s&quot;:&quot;abort&quot;},{&quot;b&quot;:&quot;56354A0B4000&quot;,&quot;o&quot;:&quot;20345B&quot;},{&quot;b&quot;:&quot;56354A0B4000&quot;,&quot;o&quot;:&quot;CA8C26&quot;},{&quot;b&quot;:&quot;56354A0B4000&quot;,&quot;o&quot;:&quot;20C77A&quot;},{&quot;b&quot;:&quot;56354A0B4000&quot;,&quot;o&quot;:&quot;20C991&quot;,&quot;s&quot;:&quot;_&lt;em&gt;wt_err&quot;},{&quot;b&quot;:&quot;56354A0B4000&quot;,&quot;o&quot;:&quot;20CBEF&quot;,&quot;s&quot;:&quot;&lt;/em&gt;&lt;em&gt;wt_panic&quot;},{&quot;b&quot;:&quot;56354A0B4000&quot;,&quot;o&quot;:&quot;179487F&quot;},{&quot;b&quot;:&quot;56354A0B4000&quot;,&quot;o&quot;:&quot;1794DDB&quot;},{&quot;b&quot;:&quot;56354A0B4000&quot;,&quot;o&quot;:&quot;1791435&quot;},{&quot;b&quot;:&quot;56354A0B4000&quot;,&quot;o&quot;:&quot;1795FA7&quot;},{&quot;b&quot;:&quot;56354A0B4000&quot;,&quot;o&quot;:&quot;17AFA35&quot;},{&quot;b&quot;:&quot;56354A0B4000&quot;,&quot;o&quot;:&quot;17E93F3&quot;},{&quot;b&quot;:&quot;56354A0B4000&quot;,&quot;o&quot;:&quot;1874747&quot;},{&quot;b&quot;:&quot;56354A0B4000&quot;,&quot;o&quot;:&quot;1874C96&quot;},{&quot;b&quot;:&quot;56354A0B4000&quot;,&quot;o&quot;:&quot;1874F5C&quot;},{&quot;b&quot;:&quot;56354A0B4000&quot;,&quot;o&quot;:&quot;17F7B31&quot;},{&quot;b&quot;:&quot;56354A0B4000&quot;,&quot;o&quot;:&quot;186A9F8&quot;},{&quot;b&quot;:&quot;56354A0B4000&quot;,&quot;o&quot;:&quot;18342BE&quot;},{&quot;b&quot;:&quot;56354A0B4000&quot;,&quot;o&quot;:&quot;18343AB&quot;},{&quot;b&quot;:&quot;56354A0B4000&quot;,&quot;o&quot;:&quot;17E5777&quot;,&quot;s&quot;:&quot;wiredtiger_open&quot;},{&quot;b&quot;:&quot;56354A0B4000&quot;,&quot;o&quot;:&quot;C8E031&quot;},{&quot;b&quot;:&quot;56354A0B4000&quot;,&quot;o&quot;:&quot;C85FC6&quot;},{&quot;b&quot;:&quot;56354A0B4000&quot;,&quot;o&quot;:&quot;B6C517&quot;},{&quot;b&quot;:&quot;56354A0B4000&quot;,&quot;o&quot;:&quot;1E9984&quot;},{&quot;b&quot;:&quot;56354A0B4000&quot;,&quot;o&quot;:&quot;20DE44&quot;},{&quot;b&quot;:&quot;7F47DE0C2000&quot;,&quot;o&quot;:&quot;22445&quot;,&quot;s&quot;:&quot;&lt;/em&gt;_libc_start_main&quot;},{&quot;b&quot;:&quot;56354A0B4000&quot;,&quot;o&quot;:&quot;26B615&quot;}],&quot;processInfo&quot;:{ &quot;mongodbVersion&quot; : &quot;3.4.9&quot;, &quot;gitVersion&quot; : &quot;876ebee8c7dd0e2d992f36a848ff4dc50ee6603e&quot;, &quot;compiledModules&quot; : [], &quot;uname&quot; : &lt;/p&gt;
{ &quot;sysname&quot; : &quot;Linux&quot;, &quot;release&quot; : &quot;3.10.0-1127.13.1.el7.x86_64&quot;, &quot;version&quot; : &quot;#1 SMP Tue Jun 23 15:46:38 UTC 2020&quot;, &quot;machine&quot; : &quot;x86_64&quot; }
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: 3, &quot;buildId&quot; : &quot;2C7EF64EF0C5AF8BCFA8F9E628E5605A7D8C52D3&quot; }, { &quot;b&quot; : &quot;7F47DB5E0000&quot;, &quot;path&quot; : &quot;/lib64/libk5crypto.so.3&quot;, &quot;elfType&quot; : 3, &quot;buildId&quot; : &quot;A20F715C514B3EA873F4CC77D585A50CB670E266&quot; }, { &quot;b&quot; : &quot;7F47DB3D2000&quot;, &quot;path&quot; : &quot;/lib64/libkrb5support.so.0&quot;, &quot;elfType&quot; : 3, &quot;buildId&quot; : &quot;9F82B06CE44724A8ACE827A2C95A9A76619EA314&quot; }, { &quot;b&quot; : &quot;7F47DB1CE000&quot;, &quot;path&quot; : &quot;/lib64/libkeyutils.so.1&quot;, &quot;elfType&quot; : 3, &quot;buildId&quot; : &quot;2E01D5AC08C1280D013AAB96B292AC58BC30A263&quot; }, { &quot;b&quot; : &quot;7F47DAFB5000&quot;, &quot;path&quot; : &quot;/lib64/libresolv.so.2&quot;, &quot;elfType&quot; : 3, &quot;buildId&quot; : &quot;2BDC2B6FF0B2C204CCE34D139A9EADA0272EB070&quot; }, { &quot;b&quot; : &quot;7F47DAD8E000&quot;, &quot;path&quot; : &quot;/lib64/libselinux.so.1&quot;, &quot;elfType&quot; : 3, &quot;buildId&quot; : &quot;1B0C0DC4F9054C5922082921C1447739F27AC8F4&quot; } ] }}&lt;br/&gt;
 mongod(+0xFA335A) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x56354b05735a&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(+0xFA2699) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x56354b056699&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(+0xFA2B66) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x56354b056b66&amp;#93;&lt;/span&gt;&lt;br/&gt;
 libpthread.so.0(+0xF6D0) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x7f47de49e6d0&amp;#93;&lt;/span&gt;&lt;br/&gt;
 libc.so.6(gsignal+0x37) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x7f47de0f8277&amp;#93;&lt;/span&gt;&lt;br/&gt;
 libc.so.6(abort+0x148) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x7f47de0f9968&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(+0x20345B) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x56354a2b745b&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(+0xCA8C26) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x56354ad5cc26&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(+0x20C77A) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x56354a2c077a&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(__wt_err+0xA0) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x56354a2c0991&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(__wt_panic+0x24) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x56354a2c0bef&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(+0x179487F) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x56354b84887f&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(+0x1794DDB) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x56354b848ddb&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(+0x1791435) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x56354b845435&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(+0x1795FA7) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x56354b849fa7&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(+0x17AFA35) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x56354b863a35&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(+0x17E93F3) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x56354b89d3f3&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(+0x1874747) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x56354b928747&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(+0x1874C96) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x56354b928c96&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(+0x1874F5C) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x56354b928f5c&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(+0x17F7B31) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x56354b8abb31&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(+0x186A9F8) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x56354b91e9f8&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(+0x18342BE) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x56354b8e82be&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(+0x18343AB) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x56354b8e83ab&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(wiredtiger_open+0x1767) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x56354b899777&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(+0xC8E031) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x56354ad42031&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(+0xC85FC6) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x56354ad39fc6&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(+0xB6C517) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x56354ac20517&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(+0x1E9984) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x56354a29d984&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(+0x20DE44) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x56354a2c1e44&amp;#93;&lt;/span&gt;&lt;br/&gt;
 libc.so.6(__libc_start_main+0xF5) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x7f47de0e4445&amp;#93;&lt;/span&gt;&lt;br/&gt;
 mongod(+0x26B615) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x56354a31f615&amp;#93;&lt;/span&gt;&lt;br/&gt;
----- END BACKTRACE -----&lt;/p&gt;</description>
                <environment></environment>
        <key id="1405523">SERVER-49412</key>
            <summary>file:WiredTiger.wt read checksum error, mongodb won&apos;t start</summary>
                <type id="6" iconUrl="https://jira.mongodb.org/secure/viewavatar?size=xsmall&amp;avatarId=14720&amp;avatarType=issuetype">Question</type>
                                            <priority id="2" iconUrl="https://jira.mongodb.org/images/icons/priorities/critical.svg">Critical - P2</priority>
                        <status id="6" iconUrl="https://jira.mongodb.org/images/icons/statuses/closed.png" description="The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.">Closed</status>
                    <statusCategory id="3" key="done" colorName="success"/>
                                    <resolution id="9">Done</resolution>
                                        <assignee username="dmitry.agranat@mongodb.com">Dmitry Agranat</assignee>
                                    <reporter username="mpeterson@rglholdings.com">Michael Peterson</reporter>
                        <labels>
                    </labels>
                <created>Thu, 9 Jul 2020 21:22:48 +0000</created>
                <updated>Tue, 14 Jul 2020 10:42:40 +0000</updated>
                            <resolved>Tue, 14 Jul 2020 10:42:40 +0000</resolved>
                                                                                        <votes>0</votes>
                                    <watches>1</watches>
                                                                                                                <comments>
                            <comment id="3283516" author="JIRAUSER1254061" created="Mon, 13 Jul 2020 21:43:03 +0000"  >&lt;p&gt;The fourth backup I pulled i was able to run a successful repair on. This can be cancelled (i dont see how to do it myself?)&lt;/p&gt;

&lt;p&gt;Thank you for all of your work you do for the community!&lt;/p&gt;</comment>
                    </comments>
                    <attachments>
                            <attachment id="269375" name="WiredTiger.turtle" size="1018" author="mpeterson@rglholdings.com" created="Thu, 9 Jul 2020 21:22:32 +0000"/>
                            <attachment id="269374" name="WiredTiger.wt" size="409600" author="mpeterson@rglholdings.com" created="Thu, 9 Jul 2020 21:22:33 +0000"/>
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