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    <title>MongoDB Jira</title>
    <link>https://jira.mongodb.org</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>9.7.1</version>
        <build-number>970001</build-number>
        <build-date>13-04-2023</build-date>
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<item>
            <title>[SERVER-5835] failed to create new data node: Got signal: 7 (Bus error)</title>
                <link>https://jira.mongodb.org/browse/SERVER-5835</link>
                <project id="10000" key="SERVER">Core Server</project>
                    <description>&lt;p&gt;We had replication problems in our production environment with mongodb 1.8.2 after a server crash.&lt;br/&gt;
Over 12 TB data were synced until nearly finishing, then slave crashed.&lt;/p&gt;

&lt;p&gt;Then we tested replication with mongodb 2.0.5-rc0. The database size is about a hundred DB.&lt;/p&gt;

&lt;p&gt;The testing nodes were started with the following commands:&lt;/p&gt;

&lt;p&gt;/usr/local/mongodb/bin/mongod --port 27020 --replSet jingoal --dbpath=/mongo_data/igoal1/ --logpath=/usr/local/mongodb/log/mongodb1.log --logappend --oplogSize 20000 --journal --fork&lt;br/&gt;
/usr/local/mongodb/bin/mongod --port 27021 --replSet jingoal --dbpath=/mongo_data/igoal4/ --logpath=/usr/local/mongodb/log/mongodb4.log --logappend --oplogSize 20000 --journal --fork&lt;br/&gt;
/usr/local/mongodb/bin/mongod --port 27022 --replSet jingoal --dbpath=/data2/igoal5/ --logpath=/usr/local/mongodb/log/mongodb5.log --logappend --oplogSize 20000 --journal --fork&lt;/p&gt;

&lt;hr /&gt;
&lt;p&gt;Here is the error log from testing (2.0.5-rc0):&lt;/p&gt;

&lt;p&gt;Fri May 11 20:21:52 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn514&amp;#93;&lt;/span&gt; end connection 192.168.0.64:43413&lt;br/&gt;
Fri May 11 20:21:52 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; connection accepted from 192.168.0.64:43417 #516&lt;br/&gt;
Fri May 11 20:22:19 Invalid access at address: 0x7fd8119ac000&lt;/p&gt;

&lt;p&gt;Fri May 11 20:22:19 Got signal: 7 (Bus error).&lt;/p&gt;

&lt;p&gt;Fri May 11 20:22:20 Backtrace:&lt;br/&gt;
0xa95df9 0xa9651c 0x7fecd0c21a80 0x7fecd0196feb 0x8b4239 0x8b576b 0x85aa85 0x5c183a 0x850885 0x852995 0x8542e9 0x82e76a 0x830323 0x828381 0x828438 0x8288d0 0xaabd90 0x7fecd&lt;br/&gt;
0c19fc7 0x7fecd01e959d&lt;br/&gt;
 /usr/local/mongodb/bin/mongod(_ZN5mongo10abruptQuitEi+0x3a9) &lt;span class=&quot;error&quot;&gt;&amp;#91;0xa95df9&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/local/mongodb/bin/mongod(_ZN5mongo24abruptQuitWithAddrSignalEiP7siginfoPv+0x22c) &lt;span class=&quot;error&quot;&gt;&amp;#91;0xa9651c&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /lib/libpthread.so.0 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x7fecd0c21a80&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /lib/libc.so.6(memcpy+0x15b) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x7fecd0196feb&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/local/mongodb/bin/mongod(_ZN5mongo11DataFileMgr6insertEPKcPKvibbPb+0x679) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x8b4239&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/local/mongodb/bin/mongod(_ZN5mongo11DataFileMgr16insertWithObjModEPKcRNS_7BSONObjEb+0x4b) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x8b576b&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/local/mongodb/bin/mongod(_ZN5mongo6Cloner3FunclERNS_27DBClientCursorBatchIteratorE+0x545) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x85aa85&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/local/mongodb/bin/mongod(_ZN5mongo18DBClientConnection5queryEN5boost8functionIFvRNS_27DBClientCursorBatchIteratorEEEERKSsNS_5QueryEPKNS_7BSONObjEi+0x1aa) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x5c183a&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/local/mongodb/bin/mongod(_ZN5mongo6Cloner4copyEPKcS2_bbbbbbNS_5QueryE+0x3c5) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x850885&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/local/mongodb/bin/mongod(_ZN5mongo6Cloner2goEPKcRSsRKSsbbbbbbPi+0x1665) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x852995&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/local/mongodb/bin/mongod(_ZN5mongo9cloneFromEPKcRSsRKSsbbbbbbPi+0x59) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x8542e9&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/local/mongodb/bin/mongod(_ZN5mongo11ReplSetImpl18_syncDoInitialSyncEv+0xe6a) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x82e76a&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/local/mongodb/bin/mongod(_ZN5mongo11ReplSetImpl17syncDoInitialSyncEv+0x23) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x830323&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/local/mongodb/bin/mongod(_ZN5mongo11ReplSetImpl11_syncThreadEv+0x61) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x828381&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/local/mongodb/bin/mongod(_ZN5mongo11ReplSetImpl10syncThreadEv+0x48) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x828438&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/local/mongodb/bin/mongod(_ZN5mongo15startSyncThreadEv+0xa0) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x8288d0&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/local/mongodb/bin/mongod(thread_proxy+0x80) &lt;span class=&quot;error&quot;&gt;&amp;#91;0xaabd90&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /lib/libpthread.so.0 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x7fecd0c19fc7&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /lib/libc.so.6(clone+0x6d) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x7fecd01e959d&amp;#93;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;Fri May 11 20:22:20 &lt;span class=&quot;error&quot;&gt;&amp;#91;initandlisten&amp;#93;&lt;/span&gt; connection accepted from 192.168.0.64:43421 #517&lt;br/&gt;
Fri May 11 20:22:20 &lt;span class=&quot;error&quot;&gt;&amp;#91;conn515&amp;#93;&lt;/span&gt; end connection 192.168.0.64:43415&lt;br/&gt;
Logstream::get called in uninitialized state&lt;br/&gt;
Fri May 11 20:22:20 ERROR: Client::~Client _context should be null but is not; client:rsSync&lt;br/&gt;
Logstream::get called in uninitialized state&lt;br/&gt;
Fri May 11 20:22:20 ERROR: Client::shutdown not called: rsSync&lt;/p&gt;

&lt;hr /&gt;
&lt;p&gt;We have searched google, mongodb jira and forums, with some similar reportings, but no idea how to fix this problem.&lt;br/&gt;
So need your help, thanks.&lt;/p&gt;</description>
                <environment>A replica set for testing with 1 master and 2 data nodes on a Debian server:&lt;br/&gt;
&lt;br/&gt;
os:debian lenny(5.0.4)&lt;br/&gt;
kernel:2.6.26-2-amd64 &lt;br/&gt;
&lt;br/&gt;
CPU:Pentium(R) Dual-Core  CPU      E5300  @ 2.60GHz&lt;br/&gt;
Memory:4G&lt;br/&gt;
disk: sda 500G&lt;br/&gt;
&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp;&amp;nbsp;sdb 320G&lt;br/&gt;
&lt;br/&gt;
Mongodb 2.0.5-rc0</environment>
        <key id="38614">SERVER-5835</key>
            <summary>failed to create new data node: Got signal: 7 (Bus error)</summary>
                <type id="1" iconUrl="https://jira.mongodb.org/secure/viewavatar?size=xsmall&amp;avatarId=14703&amp;avatarType=issuetype">Bug</type>
                                            <priority id="3" iconUrl="https://jira.mongodb.org/images/icons/priorities/major.svg">Major - P3</priority>
                        <status id="6" iconUrl="https://jira.mongodb.org/images/icons/statuses/closed.png" description="The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.">Closed</status>
                    <statusCategory id="3" key="done" colorName="success"/>
                                    <resolution id="4">Incomplete</resolution>
                                        <assignee username="scotthernandez">Scott Hernandez</assignee>
                                    <reporter username="mengqy">mengqy</reporter>
                        <labels>
                            <label>crash</label>
                            <label>replicaset</label>
                            <label>replication</label>
                    </labels>
                <created>Mon, 14 May 2012 08:06:05 +0000</created>
                <updated>Fri, 8 Mar 2013 15:56:06 +0000</updated>
                            <resolved>Thu, 18 Oct 2012 16:51:37 +0000</resolved>
                                    <version>2.0.5</version>
                                                    <component>Replication</component>
                                        <votes>0</votes>
                                    <watches>3</watches>
                                                                                                                <comments>
                            <comment id="173487" author="scotthernandez" created="Wed, 10 Oct 2012 19:25:45 +0000"  >&lt;p&gt;mengqy, was this resolved with more memory? Have you upgraded since then?&lt;/p&gt;</comment>
                            <comment id="119495" author="mengqy" created="Tue, 15 May 2012 06:53:28 +0000"  >&lt;p&gt;Production cluster: &lt;br/&gt;
The ongoing replicating shows that slave eventually eats up RAM and swap, gets almost dead:&lt;br/&gt;
1. Out and back from cacti once a time; &lt;br/&gt;
2. Seems alive from rs.status();&lt;br/&gt;
3. Ping ok but ssh fails. &lt;/p&gt;

&lt;p&gt;rs.status() of primary (production cluster):&lt;/p&gt;

&lt;p&gt;{&lt;br/&gt;
        &quot;db&quot; : &quot;jingoalmail&quot;,&lt;br/&gt;
        &quot;collections&quot; : 7,&lt;br/&gt;
        &quot;objects&quot; : 202592396,&lt;br/&gt;
        &quot;avgObjSize&quot; : 65541.24188915758,&lt;br/&gt;
        &quot;dataSize&quot; : NumberLong(&quot;13278157231140&quot;),&lt;br/&gt;
        &quot;storageSize&quot; : NumberLong(&quot;13283877803280&quot;),&lt;br/&gt;
        &quot;numExtents&quot; : 6407,&lt;br/&gt;
        &quot;indexes&quot; : 7,&lt;br/&gt;
        &quot;indexSize&quot; : 21428296624,&lt;br/&gt;
        &quot;fileSize&quot; : NumberLong(&quot;13561110724608&quot;),&lt;br/&gt;
        &quot;ok&quot; : 1&lt;br/&gt;
}&lt;/p&gt;

&lt;p&gt;==&amp;gt;  &lt;br/&gt;
About 13 TB data, 200 million objects, 21 GB index size.&lt;br/&gt;
Seems need more RAM inaddition to current 32 GB, right?&lt;br/&gt;
64 GB enough or more?&lt;/p&gt;</comment>
                            <comment id="119477" author="mengqy" created="Tue, 15 May 2012 04:18:24 +0000"  >&lt;p&gt;Hi Eliot, thanks for your quick reply and reminding about primary data health.&lt;/p&gt;

&lt;p&gt;Our testing cluster is used as hybrid data storage for json data and files. The problematic production cluster is used as file storage.&lt;br/&gt;
Primaries work well in testing and production clusters, with good data that are serving online users or our testing team.&lt;br/&gt;
We have 32GB RAM in each production cluster data nodes. Do we need more RAM to replicate a new data node for over 12 TB data?&lt;/p&gt;

&lt;p&gt;&amp;#8211;&lt;br/&gt;
We just finished another testing with 2.0.5, about a hundred GB data. With steadily growing machine loads as before, then crashed again with the following errors:&lt;/p&gt;

&lt;p&gt;Tue May 15 10:14:44 &lt;span class=&quot;error&quot;&gt;&amp;#91;rsHealthPoll&amp;#93;&lt;/span&gt; DBClientCursor::init call() failed&lt;br/&gt;
Tue May 15 10:14:44 &lt;span class=&quot;error&quot;&gt;&amp;#91;rsHealthPoll&amp;#93;&lt;/span&gt; replSet info 192.168.0.64:27020 is down (or slow to respond): DBClientBase::findN: transport error: 192.168.0.64:27020 query: &lt;/p&gt;
{ replSetHe
artbeat: &quot;jingoal&quot;, v: 5, pv: 1, checkEmpty: false, from: &quot;192.168.0.64:27022&quot; }
&lt;p&gt;Tue May 15 10:14:44 &lt;span class=&quot;error&quot;&gt;&amp;#91;rsHealthPoll&amp;#93;&lt;/span&gt; replSet member 192.168.0.64:27020 is now in state DOWN&lt;br/&gt;
Tue May 15 10:14:44 Invalid access at address: 0x7f047d91fde8&lt;/p&gt;

&lt;p&gt;Tue May 15 10:14:45 Got signal: 7 (Bus error).&lt;/p&gt;

&lt;p&gt;Tue May 15 10:14:46 Backtrace:&lt;br/&gt;
0x98b609 0x98bbe0 0x9a7600 0x760a42 0x7a6a98 0x7b2229 0x7b392b 0x758685 0x4c69b4 0x751287 0x753247 0x754b99 0x72fae5 0x731458 0x72c5f1 0x72c6a8 0x72cb30 0xa0dce9 0x9a379d 0&lt;br/&gt;
xa92fb9&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x98b609&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x98bbe0&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x9a7600&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x760a42&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x7a6a98&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x7b2229&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x7b392b&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x758685&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x4c69b4&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x751287&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x753247&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x754b99&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x72fae5&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x731458&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x72c5f1&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x72c6a8&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x72cb30&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0xa0dce9&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x9a379d&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0xa92fb9&amp;#93;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;Logstream::get called in uninitialized state&lt;br/&gt;
pure virtual method called&lt;br/&gt;
pure virtual method called&lt;br/&gt;
pure virtual method called&lt;br/&gt;
pure virtual method called&lt;br/&gt;
pure virtual method called&lt;br/&gt;
pure virtual method called&lt;br/&gt;
Tue May 15 10:14:47 Tue May 15 10:14:47 pure virtual method called&lt;br/&gt;
terminate() called, printing stack:&lt;br/&gt;
Tue May 15 10:14:47 terminate() called, printing stack:&lt;br/&gt;
terminate() called, printing stack:&lt;br/&gt;
Tue May 15 10:14:47 terminate() called, printing stack:&lt;br/&gt;
Tue May 15 10:14:47 terminate() called, printing stack:&lt;br/&gt;
Tue May 15 10:14:47 terminate() called, printing stack:&lt;br/&gt;
Tue May 15 10:14:47 terminate() called, printing stack:&lt;br/&gt;
Tue May 15 10:14:46 Invalid access at address: 0x19f0000&lt;/p&gt;

&lt;p&gt;Tue May 15 10:14:47 Got signal: 11 (Segmentation fault).&lt;/p&gt;

&lt;p&gt;Tue May 15 10:14:47 &lt;span class=&quot;error&quot;&gt;&amp;#91;rsHealthPoll&amp;#93;&lt;/span&gt; replSet member 192.168.0.64:27020 is up&lt;br/&gt;
0x98b07d 0xa09d86 0xa09db3 0xa0a2cf 0x879aff 0x87a98a 0x83de25 0x841779 0x78ab37 0x78eeb6 0x999988 0x53cc37 0x9a379d 0xa92fb9&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x98b07d&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0xa09d86&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0xa09db3&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0xa0a2cf&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x879aff&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x87a98a&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x83de25&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x841779&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x78ab37&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x78eeb6&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x999988&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x53cc37&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0x9a379d&amp;#93;&lt;/span&gt;&lt;br/&gt;
 &lt;span class=&quot;error&quot;&gt;&amp;#91;0xa92fb9&amp;#93;&lt;/span&gt;&lt;br/&gt;
Tue May 15 10:14:47 Got signal: 6 (Aborted).&lt;/p&gt;
</comment>
                            <comment id="119167" author="eliot" created="Mon, 14 May 2012 15:48:36 +0000"  >&lt;p&gt;What data is in the primary?&lt;br/&gt;
Is it known good?&lt;/p&gt;</comment>
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