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    <title>MongoDB Jira</title>
    <link>https://jira.mongodb.org</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>9.7.1</version>
        <build-number>970001</build-number>
        <build-date>13-04-2023</build-date>
    </build-info>


<item>
            <title>[SERVER-60164] db.serverStatus() hang on SECONDARY server #secondtime</title>
                <link>https://jira.mongodb.org/browse/SERVER-60164</link>
                <project id="10000" key="SERVER">Core Server</project>
                    <description>&lt;p&gt;This is a continuation of &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-52688&quot; title=&quot;db.serverStatus() hang on SECONDARY server&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-52688&quot;&gt;&lt;del&gt;SERVER-52688&lt;/del&gt;&lt;/a&gt;. I&apos;m unable to reopen the issue, so I&apos;m opening a new one.&lt;/p&gt;

&lt;p&gt;The problem is the same `&lt;tt&gt;mongo --eval &apos;db.serverStatus()&apos;&lt;/tt&gt;` hangs forever on SECONDARY server. This problem appeared around 2021-09-22 12:31:35.&lt;/p&gt;

&lt;p&gt;Diagnostic data that should cover the moment when the problem happened: &lt;a href=&quot;https://disk.yandex.ru/d/IIW42L63fVojuw&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;https://disk.yandex.ru/d/IIW42L63fVojuw&lt;/a&gt;&lt;/p&gt;

&lt;p&gt;Attached gdb_202109-23_11-07-08.txt.xz is the output of the following command:&lt;/p&gt;
&lt;p/&gt;
&lt;div id=&quot;syntaxplugin&quot; class=&quot;syntaxplugin&quot; style=&quot;border: 1px dashed #bbb; border-radius: 5px !important; overflow: auto; max-height: 30em;&quot;&gt;
&lt;table cellspacing=&quot;0&quot; cellpadding=&quot;0&quot; border=&quot;0&quot; width=&quot;100%&quot; style=&quot;font-size: 1em; line-height: 1.4em !important; font-weight: normal; font-style: normal; color: black;&quot;&gt;
		&lt;tbody &gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;  margin-top: 10px;   margin-bottom: 10px;  width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;gdb -p $(pidof mongod) -batch -ex &lt;/span&gt;&lt;span style=&quot;color: blue; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;&apos;thread apply all bt&apos;&lt;/span&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; &amp;gt; gdb_`date +&lt;/span&gt;&lt;span style=&quot;color: blue; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;&quot;%Y%m-%d_%H-%M-%S&quot;&lt;/span&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;`.txt&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
			&lt;/tbody&gt;
&lt;/table&gt;
&lt;/div&gt;
&lt;p/&gt;
&lt;p&gt;&#160;&lt;/p&gt;

&lt;p&gt;&#160;&lt;/p&gt;</description>
                <environment></environment>
        <key id="1881608">SERVER-60164</key>
            <summary>db.serverStatus() hang on SECONDARY server #secondtime</summary>
                <type id="1" iconUrl="https://jira.mongodb.org/secure/viewavatar?size=xsmall&amp;avatarId=14703&amp;avatarType=issuetype">Bug</type>
                                            <priority id="3" iconUrl="https://jira.mongodb.org/images/icons/priorities/major.svg">Major - P3</priority>
                        <status id="6" iconUrl="https://jira.mongodb.org/images/icons/statuses/closed.png" description="The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.">Closed</status>
                    <statusCategory id="3" key="done" colorName="success"/>
                                    <resolution id="3">Duplicate</resolution>
                                        <assignee username="edwin.zhou@mongodb.com">Edwin Zhou</assignee>
                                    <reporter username="peter.volkov@gmail.com">Peter Volkov</reporter>
                        <labels>
                    </labels>
                <created>Thu, 23 Sep 2021 08:15:33 +0000</created>
                <updated>Wed, 13 Oct 2021 18:16:42 +0000</updated>
                            <resolved>Wed, 13 Oct 2021 17:57:57 +0000</resolved>
                                                                                        <votes>0</votes>
                                    <watches>5</watches>
                                                                                                                <comments>
                            <comment id="4122260" author="JIRAUSER1257066" created="Wed, 13 Oct 2021 17:57:57 +0000"  >&lt;p&gt;Hi &lt;a href=&quot;https://jira.mongodb.org/secure/ViewProfile.jspa?name=peter.volkov%40gmail.com&quot; class=&quot;user-hover&quot; rel=&quot;peter.volkov@gmail.com&quot;&gt;peter.volkov@gmail.com&lt;/a&gt;,&lt;/p&gt;

&lt;p&gt;Thank you for following up, providing us detailed diagnostic data, and for your patience while we investigate this issue. I can confirm that the behavior you&apos;re seeing is the same as the previous ticket you&apos;ve opened, &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-52688&quot; title=&quot;db.serverStatus() hang on SECONDARY server&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-52688&quot;&gt;&lt;del&gt;SERVER-52688&lt;/del&gt;&lt;/a&gt;. The gdb that you provided showed us the following symptoms:&lt;/p&gt;
&lt;ol&gt;
	&lt;li&gt;The oplog buffer is full (OplogBufferBlockingQueue::waitForSpace)
&lt;p/&gt;
&lt;div id=&quot;syntaxplugin&quot; class=&quot;syntaxplugin&quot; style=&quot;border: 1px dashed #bbb; border-radius: 5px !important; overflow: auto; max-height: 30em;&quot;&gt;
&lt;table cellspacing=&quot;0&quot; cellpadding=&quot;0&quot; border=&quot;0&quot; width=&quot;100%&quot; style=&quot;font-size: 1em; line-height: 1.4em !important; font-weight: normal; font-style: normal; color: black;&quot;&gt;
		&lt;tbody &gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;  margin-top: 10px;   margin-bottom: 10px;  width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;1 0;clone;start_thread;std::execute_native_thread_routine:80;std::thread::_State_impl&amp;lt;...&amp;gt;;mongo::ThreadPool::_workerThreadBody;mongo::ThreadPool::_consumeTasks;mongo::ThreadPool::_doOneTask;mongo::unique_function&amp;lt;...&amp;gt;;mongo::executor::ThreadPoolTaskExecutor::runCallback;mongo::unique_function&amp;lt;...&amp;gt;;std::_Function_handler&amp;lt;...&amp;gt;;mongo::Fetcher::_callback;mongo::repl::AbstractOplogFetcher::_callback;mongo::repl::OplogFetcher::_onSuccessfulBatch;std::_Function_handler&amp;lt;...&amp;gt;;mongo::repl::BackgroundSync::_enqueueDocuments;mongo::repl::OplogBufferBlockingQueue::waitForSpace;std::condition_variable::wait:53;__gthread_cond_wait:865;pthread_cond_wait@@GLIBC_2.3.2&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
			&lt;/tbody&gt;
&lt;/table&gt;
&lt;/div&gt;
&lt;p/&gt;&lt;/li&gt;
	&lt;li&gt;The oplog applier is active but waiting for worker threads to finish (SyncTail::multiApply;mongo::ThreadPool::waitForIdle)
&lt;p/&gt;
&lt;div id=&quot;syntaxplugin&quot; class=&quot;syntaxplugin&quot; style=&quot;border: 1px dashed #bbb; border-radius: 5px !important; overflow: auto; max-height: 30em;&quot;&gt;
&lt;table cellspacing=&quot;0&quot; cellpadding=&quot;0&quot; border=&quot;0&quot; width=&quot;100%&quot; style=&quot;font-size: 1em; line-height: 1.4em !important; font-weight: normal; font-style: normal; color: black;&quot;&gt;
		&lt;tbody &gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;  margin-top: 10px;   margin-bottom: 10px;  width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;1 0;clone;start_thread;std::execute_native_thread_routine:80;std::thread::_State_impl&amp;lt;...&amp;gt;;mongo::ThreadPool::_workerThreadBody;mongo::ThreadPool::_consumeTasks;mongo::ThreadPool::_doOneTask;mongo::unique_function&amp;lt;...&amp;gt;;mongo::executor::ThreadPoolTaskExecutor::runCallback;mongo::unique_function&amp;lt;...&amp;gt;;mongo::repl::OplogApplierImpl::_run;mongo::repl::SyncTail::oplogApplication;mongo::repl::SyncTail::_oplogApplication;mongo::repl::SyncTail::multiApply;mongo::ThreadPool::waitForIdle;std::condition_variable::wait:53;__gthread_cond_wait:865;pthread_cond_wait@@GLIBC_2.3.2&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
			&lt;/tbody&gt;
&lt;/table&gt;
&lt;/div&gt;
&lt;p/&gt;&lt;/li&gt;
	&lt;li&gt;And its worker threads were waiting for work
&lt;p/&gt;
&lt;div id=&quot;syntaxplugin&quot; class=&quot;syntaxplugin&quot; style=&quot;border: 1px dashed #bbb; border-radius: 5px !important; overflow: auto; max-height: 30em;&quot;&gt;
&lt;table cellspacing=&quot;0&quot; cellpadding=&quot;0&quot; border=&quot;0&quot; width=&quot;100%&quot; style=&quot;font-size: 1em; line-height: 1.4em !important; font-weight: normal; font-style: normal; color: black;&quot;&gt;
		&lt;tbody &gt;
				&lt;tr id=&quot;syntaxplugin_code_and_gutter&quot;&gt;
						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;  margin-top: 10px;   margin-bottom: 10px;  width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;17 0;clone;start_thread;std::execute_native_thread_routine:80;std::thread::_State_impl&amp;lt;...&amp;gt;;mongo::ThreadPool::_workerThreadBody;mongo::ThreadPool::_consumeTasks;std::condition_variable::wait:53;__gthread_cond_wait:865;pthread_cond_wait@@GLIBC_2.3.2&lt;/span&gt;&lt;/pre&gt;
			&lt;/td&gt;
		&lt;/tr&gt;
			&lt;/tbody&gt;
&lt;/table&gt;
&lt;/div&gt;
&lt;p/&gt;&lt;/li&gt;
&lt;/ol&gt;


&lt;p&gt;Given these symptoms and the diagnostic data you provided, we are able track down &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-47554&quot; title=&quot;Replica Set member suddenly stopped replication process&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-47554&quot;&gt;&lt;del&gt;SERVER-47554&lt;/del&gt;&lt;/a&gt;, where we suspected that there&apos;s something specific to the OS or the libc binary that is triggering this behavior. You may help further verify that this is the same issue by providing your exact OS distro and version, and glibc version. &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-56054&quot; title=&quot;Change minThreads value for replication writer thread pool to 0&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-56054&quot;&gt;&lt;del&gt;SERVER-56054&lt;/del&gt;&lt;/a&gt; alleviates this behavior caused by a bug present on glibc v2.27. This fix is included in MongoDB v4.2.15 and I recommend upgrading to the latest version of MongoDB v4.2.&lt;/p&gt;

&lt;p&gt;I will close this issue as a duplicate of &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-56054&quot; title=&quot;Change minThreads value for replication writer thread pool to 0&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-56054&quot;&gt;&lt;del&gt;SERVER-56054&lt;/del&gt;&lt;/a&gt;.&lt;/p&gt;

&lt;p&gt;Best,&lt;br/&gt;
Edwin&lt;/p&gt;</comment>
                            <comment id="4082414" author="JIRAUSER1257570" created="Fri, 24 Sep 2021 07:30:05 +0000"  >&lt;p&gt;Ok, I&apos;ve uploaded both files:&#160;diagnostic.data.tar.xz and&#160;mongodb.log.xz to support uploader. I don&apos;t see any references here, but I hope that&apos;s expected. There was&#160;parent&quot;: {&quot;id&quot;: &quot;146396515042&quot;} in both uploads.&lt;/p&gt;</comment>
                            <comment id="4081409" author="eric.sedor" created="Thu, 23 Sep 2021 18:59:09 +0000"  >&lt;p&gt;Hi &lt;a href=&quot;https://jira.mongodb.org/secure/ViewProfile.jspa?name=peter.volkov%40gmail.com&quot; class=&quot;user-hover&quot; rel=&quot;peter.volkov@gmail.com&quot;&gt;peter.volkov@gmail.com&lt;/a&gt;, thank you very much for writing back in given the additional information. Sorry for the jira inconveniences.&lt;/p&gt;

&lt;p&gt;Would you please archive (tar or zip) the mongod.log files and the &lt;tt&gt;$dbpath/diagnostic.data&lt;/tt&gt; directory covering the incident and time of gdb stack trace and upload them to this &lt;a href=&quot;https://amphora.corp.mongodb.com/public/upload/eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.eyJmb2xkZXJfaWQiOiIxNDYzOTY1MTUwNDIiLCJleHAiOjE2MzUwMTUzNzZ9.pA8GYzdJizz4lUS0bjwrmZzePRkhJCf2K0BGvqbEgqQ&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;support uploader&lt;/a&gt; location?&lt;/p&gt;

&lt;p&gt;This is preferable to us accessing an external link for obtaining files.&lt;/p&gt;

&lt;p&gt;Gratefully,&lt;br/&gt;
Eric&lt;/p&gt;</comment>
                    </comments>
                <issuelinks>
                            <issuelinktype id="10010">
                    <name>Duplicate</name>
                                            <outwardlinks description="duplicates">
                                        <issuelink>
            <issuekey id="1678281">SERVER-56054</issuekey>
        </issuelink>
                            </outwardlinks>
                                                                <inwardlinks description="is duplicated by">
                                        <issuelink>
            <issuekey id="1881612">SERVER-60165</issuekey>
        </issuelink>
            <issuelink>
            <issuekey id="1881615">SERVER-60166</issuekey>
        </issuelink>
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                            <issuelinktype id="10012">
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                                            <outwardlinks description="related to">
                                        <issuelink>
            <issuekey id="1536981">SERVER-52688</issuekey>
        </issuelink>
                            </outwardlinks>
                                                                <inwardlinks description="is related to">
                                        <issuelink>
            <issuekey id="1315803">SERVER-47554</issuekey>
        </issuelink>
            <issuelink>
            <issuekey id="1634472">SERVER-54805</issuekey>
        </issuelink>
                            </inwardlinks>
                                    </issuelinktype>
                    </issuelinks>
                <attachments>
                            <attachment id="340123" name="Screen Shot 2021-10-12 at 4.34.35 PM.png" size="285618" author="edwin.zhou@mongodb.com" created="Tue, 12 Oct 2021 20:47:17 +0000"/>
                            <attachment id="336813" name="gdb_202109-23_11-07-08.txt.xz" size="11416" author="peter.volkov@gmail.com" created="Thu, 23 Sep 2021 08:15:28 +0000"/>
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