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    <title>MongoDB Jira</title>
    <link>https://jira.mongodb.org</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>9.7.1</version>
        <build-number>970001</build-number>
        <build-date>13-04-2023</build-date>
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<item>
            <title>[SERVER-63605] validate_tests fails after some WT changes</title>
                <link>https://jira.mongodb.org/browse/SERVER-63605</link>
                <project id="10000" key="SERVER">Core Server</project>
                    <description>&lt;p&gt;We recently merged &lt;a href=&quot;https://jira.mongodb.org/browse/WT-8695&quot; title=&quot;Remove file_close_sync config and disallow single file checkpoint&quot; class=&quot;issue-link&quot; data-issue-key=&quot;WT-8695&quot;&gt;&lt;del&gt;WT-8695&lt;/del&gt;&lt;/a&gt; (had to revert it because it generates fallouts on MDB side).&lt;br/&gt;
 We saw the issue on &lt;a href=&quot;https://evergreen.mongodb.com/task/mongodb_mongo_master_linux_64_debug_required_run_dbtest_patch_ce43fa5df1f9756219376f49df02bfd2533e8c91_620984c357e85a4f654f867b_22_02_13_22_23_01#/%23comparehashes=ce43fa5df1f9756219376f49df02bfd2533e8c91&amp;amp;threads=all#comparehashes=ce43fa5df1f9756219376f49df02bfd2533e8c91&amp;amp;threads=maxonly&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;run_dbtest on ! Shared Library Linux DEBUG&lt;/a&gt;. The test &lt;a href=&quot;https://logkeeper.mongodb.org/build/56092dbda632b8b7068bb78550108991/test/62099d1454f24868c60bee21?raw=1&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;validate_test&lt;/a&gt; failed with an unexpected number of warnings found:&lt;/p&gt;
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                <environment></environment>
        <key id="1982615">SERVER-63605</key>
            <summary>validate_tests fails after some WT changes</summary>
                <type id="1" iconUrl="https://jira.mongodb.org/secure/viewavatar?size=xsmall&amp;avatarId=14703&amp;avatarType=issuetype">Bug</type>
                                            <priority id="3" iconUrl="https://jira.mongodb.org/images/icons/priorities/major.svg">Major - P3</priority>
                        <status id="6" iconUrl="https://jira.mongodb.org/images/icons/statuses/closed.png" description="The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.">Closed</status>
                    <statusCategory id="3" key="done" colorName="success"/>
                                    <resolution id="13201">Fixed</resolution>
                                        <assignee username="jordi.olivares-provencio@mongodb.com">Jordi Olivares Provencio</assignee>
                                    <reporter username="etienne.petrel@mongodb.com">Etienne Petrel</reporter>
                        <labels>
                    </labels>
                <created>Mon, 14 Feb 2022 05:17:05 +0000</created>
                <updated>Sun, 29 Oct 2023 21:42:34 +0000</updated>
                            <resolved>Wed, 23 Feb 2022 14:18:00 +0000</resolved>
                                                    <fixVersion>6.0.0-rc0</fixVersion>
                    <fixVersion>5.3.0-rc2</fixVersion>
                                                        <votes>0</votes>
                                    <watches>8</watches>
                                                                                                                <comments>
                            <comment id="4376756" author="xgen-internal-githook" created="Fri, 25 Feb 2022 14:04:02 +0000"  >&lt;p&gt;Author:&lt;/p&gt;
{&apos;name&apos;: &apos;Jordi Olivares Provencio&apos;, &apos;email&apos;: &apos;jordi.olivares-provencio@mongodb.com&apos;, &apos;username&apos;: &apos;jordiolivares&apos;}
&lt;p&gt;Message: &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-63605&quot; title=&quot;validate_tests fails after some WT changes&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-63605&quot;&gt;&lt;del&gt;SERVER-63605&lt;/del&gt;&lt;/a&gt; Modify test to ignore transient warnings&lt;/p&gt;

&lt;p&gt;(cherry picked from commit 2fca2d4e19a642fd97374dfde65bc04799b73f58)&lt;br/&gt;
Branch: v5.3&lt;br/&gt;
&lt;a href=&quot;https://github.com/mongodb/mongo/commit/da453c7188401772c03dc59d7ce417fcf86459bd&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;https://github.com/mongodb/mongo/commit/da453c7188401772c03dc59d7ce417fcf86459bd&lt;/a&gt;&lt;/p&gt;</comment>
                            <comment id="4371237" author="xgen-internal-githook" created="Wed, 23 Feb 2022 13:42:54 +0000"  >&lt;p&gt;Author:&lt;/p&gt;
{&apos;name&apos;: &apos;Jordi Olivares Provencio&apos;, &apos;email&apos;: &apos;jordi.olivares-provencio@mongodb.com&apos;, &apos;username&apos;: &apos;jordiolivares&apos;}
&lt;p&gt;Message: &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-63605&quot; title=&quot;validate_tests fails after some WT changes&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-63605&quot;&gt;&lt;del&gt;SERVER-63605&lt;/del&gt;&lt;/a&gt; Modify test to ignore transient warnings&lt;br/&gt;
Branch: master&lt;br/&gt;
&lt;a href=&quot;https://github.com/mongodb/mongo/commit/2fca2d4e19a642fd97374dfde65bc04799b73f58&quot; class=&quot;external-link&quot; target=&quot;_blank&quot; rel=&quot;nofollow noopener&quot;&gt;https://github.com/mongodb/mongo/commit/2fca2d4e19a642fd97374dfde65bc04799b73f58&lt;/a&gt;&lt;/p&gt;</comment>
                            <comment id="4370483" author="luke.chen" created="Wed, 23 Feb 2022 01:00:06 +0000"  >&lt;p&gt;As this ticket is a dependency of &lt;a href=&quot;https://jira.mongodb.org/browse/WT-8695&quot; title=&quot;Remove file_close_sync config and disallow single file checkpoint&quot; class=&quot;issue-link&quot; data-issue-key=&quot;WT-8695&quot;&gt;&lt;del&gt;WT-8695&lt;/del&gt;&lt;/a&gt; (a 5.3 blocker), I added &quot;5.3 Required&quot; fixversion and requested the backport for this ticket. It would be great it can be resolved (and backported) soon - the 5.3 code freeze is in 2 weeks&apos; time.&#160;&lt;/p&gt;</comment>
                            <comment id="4368618" author="keith.bostic" created="Tue, 22 Feb 2022 16:00:01 +0000"  >&lt;p&gt;Thank you, &lt;a href=&quot;https://jira.mongodb.org/secure/ViewProfile.jspa?name=louis.williams&quot; class=&quot;user-hover&quot; rel=&quot;louis.williams&quot;&gt;louis.williams&lt;/a&gt;.&lt;/p&gt;

&lt;p&gt;If you&apos;re OK changing the test to ignore those warnings, that would be great!&lt;/p&gt;</comment>
                            <comment id="4367738" author="louis.williams" created="Tue, 22 Feb 2022 09:03:25 +0000"  >&lt;p&gt;The unit test failures appear to be caused by the test receiving more warnings from validate than expected. And this is due to the following warnings: &quot;Could not complete validation of table:collection-306-6794401668041455030. This is a transient issue as the collection was actively in use by other operations.&quot;&lt;/p&gt;

&lt;p&gt;We return this as a warning when we get an EBUSY error validating the tables, so this is entirely expected. &lt;/p&gt;

&lt;p&gt;We can either change the tests to ignore these messages, or change validate to use the code Chenhao provided. The latter would probably be too consequential since we run validate frequently in testing, and these tests would probably take much longer to complete.&lt;/p&gt;</comment>
                            <comment id="4367311" author="keith.bostic" created="Mon, 21 Feb 2022 21:39:06 +0000"  >&lt;p&gt;&lt;a href=&quot;https://jira.mongodb.org/secure/ViewProfile.jspa?name=geert.bosch&quot; class=&quot;user-hover&quot; rel=&quot;geert.bosch&quot;&gt;geert.bosch&lt;/a&gt;, &lt;a href=&quot;https://jira.mongodb.org/secure/ViewProfile.jspa?name=louis.williams&quot; class=&quot;user-hover&quot; rel=&quot;louis.williams&quot;&gt;louis.williams&lt;/a&gt;,&#160;could we get someone to take a fast look at &lt;a href=&quot;https://jira.mongodb.org/browse/SERVER-63605&quot; title=&quot;validate_tests fails after some WT changes&quot; class=&quot;issue-link&quot; data-issue-key=&quot;SERVER-63605&quot;&gt;&lt;del&gt;SERVER-63605&lt;/del&gt;&lt;/a&gt;? We&#8217;re hoping this is just a small test change and it&#8217;s blocking a change we&#8217;d like to get pushed: &lt;a href=&quot;https://jira.mongodb.org/browse/WT-8695&quot; title=&quot;Remove file_close_sync config and disallow single file checkpoint&quot; class=&quot;issue-link&quot; data-issue-key=&quot;WT-8695&quot;&gt;&lt;del&gt;WT-8695&lt;/del&gt;&lt;/a&gt;.&lt;/p&gt;

&lt;p&gt;The summary is we&#8217;re going to stop allowing operations like alter, or verify, that require exclusive access to files, to proceed if there is dirty data in the cache. We historically checkpointed the file to flush the dirty data from the cache to allow exclusive access, but that leads to data inconsistency as the history-store file is not checkpointed along with the file.&lt;/p&gt;

&lt;p&gt;cc: &lt;a href=&quot;https://jira.mongodb.org/secure/ViewProfile.jspa?name=alexander.gorrod&quot; class=&quot;user-hover&quot; rel=&quot;alexander.gorrod&quot;&gt;alexander.gorrod&lt;/a&gt;&lt;/p&gt;</comment>
                            <comment id="4352670" author="chenhao.qu" created="Mon, 14 Feb 2022 06:38:17 +0000"  >&lt;p&gt;WiredTiger intends to disallow single file checkpoint in &lt;a href=&quot;https://jira.mongodb.org/browse/WT-8695&quot; title=&quot;Remove file_close_sync config and disallow single file checkpoint&quot; class=&quot;issue-link&quot; data-issue-key=&quot;WT-8695&quot;&gt;&lt;del&gt;WT-8695&lt;/del&gt;&lt;/a&gt;. This means all the operations that require exclusive access to a dhandle may return ebusy if the tree is dirty. The application should keep doing database wide checkpoints before retrying these operations. The server team should fix all the tests that assumes drop, salvage, alter, rename, verify, and upgrade will succeed.&lt;/p&gt;

&lt;p&gt;The code should look like:&lt;/p&gt;


&lt;p/&gt;
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						&lt;td  style=&quot; line-height: 1.4em !important; padding: 0em; vertical-align: top;&quot;&gt;
					&lt;pre style=&quot;font-size: 1em; margin: 0 10px;  margin-top: 10px;   width: auto; padding: 0;&quot;&gt;&lt;span style=&quot;color: #006699; font-weight: bold; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt;while&lt;/span&gt;&lt;span style=&quot;color: black; font-family: &apos;Consolas&apos;, &apos;Bitstream Vera Sans Mono&apos;, &apos;Courier New&apos;, Courier, monospace !important;&quot;&gt; (session-&amp;gt;verify(session) == EBUSY)&lt;/span&gt;&lt;/pre&gt;
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&lt;p/&gt;</comment>
                            <comment id="4352669" author="JIRAUSER1258229" created="Mon, 14 Feb 2022 06:30:14 +0000"  >&lt;p&gt;&lt;a href=&quot;https://jira.mongodb.org/secure/ViewProfile.jspa?name=geert.bosch&quot; class=&quot;user-hover&quot; rel=&quot;geert.bosch&quot;&gt;geert.bosch&lt;/a&gt;, would your team be the right one to work on this ticket?&lt;/p&gt;

&lt;p&gt;&lt;a href=&quot;https://jira.mongodb.org/secure/ViewProfile.jspa?name=chenhao.qu&quot; class=&quot;user-hover&quot; rel=&quot;chenhao.qu&quot;&gt;chenhao.qu&lt;/a&gt;, can you provide more context about the intent of &lt;a href=&quot;https://jira.mongodb.org/browse/WT-8695&quot; title=&quot;Remove file_close_sync config and disallow single file checkpoint&quot; class=&quot;issue-link&quot; data-issue-key=&quot;WT-8695&quot;&gt;&lt;del&gt;WT-8695&lt;/del&gt;&lt;/a&gt;?&lt;/p&gt;</comment>
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                        <customfieldname>Steps To Reproduce</customfieldname>
                        <customfieldvalues>
                            <customfieldvalue>&lt;ul&gt;
	&lt;li&gt;Check out the latest MDB commit&lt;/li&gt;
	&lt;li&gt;Check out the following commit of WT that corresponds to &lt;a href=&quot;https://jira.mongodb.org/browse/WT-8695&quot; title=&quot;Remove file_close_sync config and disallow single file checkpoint&quot; class=&quot;issue-link&quot; data-issue-key=&quot;WT-8695&quot;&gt;&lt;del&gt;WT-8695&lt;/del&gt;&lt;/a&gt;: 2d48d69564f24dce5edf3384431b617194864a27&lt;/li&gt;
	&lt;li&gt;Import the src files of wiredtiger into mongo/src/third_party/wiredtiger
	&lt;ul&gt;
		&lt;li&gt;cp -r $WT_HOME/src/* $MDB_HOME/src/third_party/wiredtiger/src/&lt;/li&gt;
		&lt;li&gt;cp -r $WT_HOME/dist/* $MDB_HOME/src/third_party/wiredtiger/dist/&lt;/li&gt;
	&lt;/ul&gt;
	&lt;/li&gt;
	&lt;li&gt;Compile MDB
	&lt;ul&gt;
		&lt;li&gt;ninja -j400 install-all&lt;/li&gt;
	&lt;/ul&gt;
	&lt;/li&gt;
	&lt;li&gt;Execute validate_test
	&lt;ul&gt;
		&lt;li&gt;cd ./build/opt/install/bin/&lt;/li&gt;
		&lt;li&gt;./dbtest validate_tests --dur --enableMajorityReadConcern=True --storageEngine=wiredTiger&lt;/li&gt;
	&lt;/ul&gt;
	&lt;/li&gt;
&lt;/ul&gt;
</customfieldvalue>

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                                                                                                                                                                                                                                                                    <customfield id="customfield_10053" key="com.atlassian.jira.ext.charting:timeinstatus">
                        <customfieldname>Time In Status</customfieldname>
                        <customfieldvalues>
                            
                        </customfieldvalues>
                    </customfield>
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        <customfield id="customfield_22870" key="com.onresolve.jira.groovy.groovyrunner:scripted-field">
                        <customfieldname>Triagers</customfieldname>
                        <customfieldvalues>
                                

                        </customfieldvalues>
                    </customfield>
                                                                                                                                                                                                                                                                                                                                                                                    <customfield id="customfield_14350" key="com.pyxis.greenhopper.jira:gh-lexo-rank">
                        <customfieldname>serverRank</customfieldname>
                        <customfieldvalues>
                            <customfieldvalue>1|i0jnwn:</customfieldvalue>

                        </customfieldvalues>
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