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    <title>MongoDB Jira</title>
    <link>https://jira.mongodb.org</link>
    <description>This file is an XML representation of an issue</description>
    <language>en-us</language>    <build-info>
        <version>9.7.1</version>
        <build-number>970001</build-number>
        <build-date>13-04-2023</build-date>
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<item>
            <title>[SERVER-7607] Delay on replica resynchronization</title>
                <link>https://jira.mongodb.org/browse/SERVER-7607</link>
                <project id="10000" key="SERVER">Core Server</project>
                    <description>&lt;p&gt;I have a mongo instance used primarily for backup, running LVM on loop filesystems (losetup /dev/loop0 /lvmdata/data0). The LVM kernel module crashes occasionally, and once I bring the mongo instance up, it joins as a secondary (as expected), only it doesn&apos;t start catching up.&lt;/p&gt;

&lt;p&gt;After an hour or so, it begins to catch up. I noticed this in the logs after it was in sync. I am not sure of the timing of events, as I looked at the logs after it caught up.&lt;/p&gt;

&lt;p&gt;Fri Nov  9 20:47:34 &lt;span class=&quot;error&quot;&gt;&amp;#91;rsSync&amp;#93;&lt;/span&gt; warning: DR102 too much data written uncommitted 314.577MB&lt;br/&gt;
Fri Nov  9 20:47:36 &lt;span class=&quot;error&quot;&gt;&amp;#91;rsSync&amp;#93;&lt;/span&gt;  local.oplog.rs warning assertion failure _intents.size() &amp;lt; 2000000 src/mongo/db/dur_commitjob.h 101&lt;br/&gt;
0xade6e1 0x802c5a 0x78c4a0 0x78c4ff 0x78c7d2 0x78c8ed 0x78c95b 0xa07c1a 0x739675 0xb6708a 0x64b5eb 0x65345e 0x6538f8 0x65394a 0x653d58 0x7c3659 0x7f22b7718e9a 0&lt;br/&gt;
x7f22b6a2ddbd &lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo15printStackTraceERSo+0x21) &lt;span class=&quot;error&quot;&gt;&amp;#91;0xade6e1&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo9wassertedEPKcS1_j+0x11a) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x802c5a&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo3dur9CommitJob4noteEPvi+0x280) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x78c4a0&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo3dur18ThreadLocalIntents8_unspoolEv+0x4f) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x78c4ff&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo3dur18ThreadLocalIntents7unspoolEv+0x52) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x78c7d2&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo3dur18ThreadLocalIntents4pushERKNS0_11WriteIntentE+0x6d) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x78c8ed&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo3dur11DurableImpl18declareWriteIntentEPvj+0x6b) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x78c95b&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo3dur11DurableImpl10writingPtrEPvj+0xa) &lt;span class=&quot;error&quot;&gt;&amp;#91;0xa07c1a&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo11DataFileMgr17fast_oplog_insertEPNS_16NamespaceDetailsEPKci+0x195) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x739675&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo11_logOpObjRSERKNS_7BSONObjE+0x27a) &lt;span class=&quot;error&quot;&gt;&amp;#91;0xb6708a&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo7replset8SyncTail15applyOpsToOplogEPSt5dequeINS_7BSONObjESaIS3_EE+0x4b) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x64b5eb&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo7replset8SyncTail16oplogApplicationEv+0x48e) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x65345e&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo11ReplSetImpl11_syncThreadEv+0xb8) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x6538f8&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo11ReplSetImpl10syncThreadEv+0x2a) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x65394a&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo15startSyncThreadEv+0xa8) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x653d58&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod() &lt;span class=&quot;error&quot;&gt;&amp;#91;0x7c3659&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /lib/x86_64-linux-gnu/libpthread.so.0(+0x7e9a) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x7f22b7718e9a&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /lib/x86_64-linux-gnu/libc.so.6(clone+0x6d) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x7f22b6a2ddbd&amp;#93;&lt;/span&gt;&lt;br/&gt;
Fri Nov  9 20:47:41 &lt;span class=&quot;error&quot;&gt;&amp;#91;rsSync&amp;#93;&lt;/span&gt;  local.oplog.rs warning assertion failure _intents.size() &amp;lt; 2000000 src/mongo/db/dur_commitjob.h 101&lt;br/&gt;
0xade6e1 0x802c5a 0x78c4a0 0x78c4ff 0x78c7d2 0x78c8ed 0x78c95b 0xa07c1a 0xb670ba 0x64b5eb 0x65345e 0x6538f8 0x65394a 0x653d58 0x7c3659 0x7f22b7718e9a 0x7f22b6a2&lt;br/&gt;
ddbd &lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo15printStackTraceERSo+0x21) &lt;span class=&quot;error&quot;&gt;&amp;#91;0xade6e1&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo9wassertedEPKcS1_j+0x11a) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x802c5a&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo3dur9CommitJob4noteEPvi+0x280) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x78c4a0&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo3dur18ThreadLocalIntents8_unspoolEv+0x4f) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x78c4ff&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo3dur18ThreadLocalIntents7unspoolEv+0x52) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x78c7d2&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo3dur18ThreadLocalIntents4pushERKNS0_11WriteIntentE+0x6d) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x78c8ed&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo3dur11DurableImpl18declareWriteIntentEPvj+0x6b) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x78c95b&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo3dur11DurableImpl10writingPtrEPvj+0xa) &lt;span class=&quot;error&quot;&gt;&amp;#91;0xa07c1a&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo11_logOpObjRSERKNS_7BSONObjE+0x2aa) &lt;span class=&quot;error&quot;&gt;&amp;#91;0xb670ba&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo7replset8SyncTail15applyOpsToOplogEPSt5dequeINS_7BSONObjESaIS3_EE+0x4b) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x64b5eb&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo7replset8SyncTail16oplogApplicationEv+0x48e) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x65345e&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo11ReplSetImpl11_syncThreadEv+0xb8) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x6538f8&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo11ReplSetImpl10syncThreadEv+0x2a) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x65394a&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod(_ZN5mongo15startSyncThreadEv+0xa8) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x653d58&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /usr/bin/mongod() &lt;span class=&quot;error&quot;&gt;&amp;#91;0x7c3659&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /lib/x86_64-linux-gnu/libpthread.so.0(+0x7e9a) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x7f22b7718e9a&amp;#93;&lt;/span&gt;&lt;br/&gt;
 /lib/x86_64-linux-gnu/libc.so.6(clone+0x6d) &lt;span class=&quot;error&quot;&gt;&amp;#91;0x7f22b6a2ddbd&amp;#93;&lt;/span&gt;&lt;/p&gt;</description>
                <environment>Ubuntu 12.04</environment>
        <key id="55815">SERVER-7607</key>
            <summary>Delay on replica resynchronization</summary>
                <type id="1" iconUrl="https://jira.mongodb.org/secure/viewavatar?size=xsmall&amp;avatarId=14703&amp;avatarType=issuetype">Bug</type>
                                            <priority id="3" iconUrl="https://jira.mongodb.org/images/icons/priorities/major.svg">Major - P3</priority>
                        <status id="6" iconUrl="https://jira.mongodb.org/images/icons/statuses/closed.png" description="The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.">Closed</status>
                    <statusCategory id="3" key="done" colorName="success"/>
                                    <resolution id="9">Done</resolution>
                                        <assignee username="jantje.daniel">Ian Daniel</assignee>
                                    <reporter username="eric@schematiclabs.com">Eric Sabban</reporter>
                        <labels>
                            <label>performance</label>
                            <label>replicaset</label>
                            <label>replication</label>
                    </labels>
                <created>Fri, 9 Nov 2012 21:04:08 +0000</created>
                <updated>Fri, 7 Apr 2023 13:56:23 +0000</updated>
                            <resolved>Sun, 18 Nov 2012 21:58:08 +0000</resolved>
                                    <version>2.2.0</version>
                                                    <component>Diagnostics</component>
                    <component>Internal Code</component>
                    <component>Performance</component>
                    <component>Replication</component>
                                        <votes>0</votes>
                                    <watches>4</watches>
                                                                                                                <comments>
                            <comment id="193102" author="jantje.daniel" created="Sun, 18 Nov 2012 21:58:08 +0000"  >&lt;p&gt;Hi Eric,&lt;/p&gt;

&lt;p&gt;I&apos;m resolving this issue. Please re-open it if you are still having the problem.&lt;/p&gt;

&lt;p&gt;Kind regards,&lt;br/&gt;
Ian&lt;/p&gt;</comment>
                            <comment id="187198" author="jantje.daniel" created="Tue, 13 Nov 2012 00:04:20 +0000"  >&lt;p&gt;Hi Eric,&lt;/p&gt;

&lt;p&gt;We you able to upgrade to 2.2.1, and did this resolve the problem?&lt;/p&gt;

&lt;p&gt;Kind regards,&lt;br/&gt;
Ian&lt;/p&gt;</comment>
                            <comment id="184871" author="eliot" created="Sat, 10 Nov 2012 06:44:23 +0000"  >&lt;p&gt;This is an issue in 2.2.0 and is addressed in 2.2.1&lt;br/&gt;
Can you try upgrading?&lt;/p&gt;</comment>
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