In shutdownGlobalStorageEngineCleanly() we call StorageControl::stopStorageControls() followed by storageEngine->cleanShutdown(). Journal flusher is shut down in stopStorageControls().  It used to be that the collection catalog isn't closed until in StorageEngineImpl::cleanShutdown(), but SERVER-98989 moved ColllectionCatalog shutdown to shutDownCollectionCatalogAndGlobalStorageEngineCleanly() which now closes the collection catalog first. Since the JournalFlusher isn't yet shut down, it may call the journalListener's onDurable callback which is used by replication which assumes the oplog record store is still valid.