Hi,

After upgrade MongoDB from version 5.0.14 to version 5.0.15, the mongod cannot be started via systemd.

System info:

• OS: CentOS Linux release 7.9.2009 (Core)
• Systemd: systemd-219-78.el7_9.7.x86_64
• MongoDB: 5.0.15.
• Yum repo: https://repo.mongodb.org/yum/redhat/$releasever/mongodb-org/5.0/$basearch/

Mongod.conf

------

storage:
  dbPath: /data/mongodb/data
  journal:
    enabled: true
  engine: wiredTiger
  wiredTiger:
    engineConfig:
      cacheSizeGB: 4
    collectionConfig:
      blockCompressor: snappy

systemLog:
  destination: file
  logAppend: true
  path: /var/log/mongodb/mongod.log
  logRotate: reopen

processManagement:
  fork: true
  pidFilePath: /var/run/mongodb/mongod.pid

net:
  port: 27017
  bindIp: 0.0.0.0

replication:
  replSetName: rs_mongodb5

operationProfiling:
  slowOpThresholdMs: 90
  mode: slowOp

security:
  authorization: enabled
  keyFile: /data/mongodb/repl.key

/usr/lib/systemd/system/mongod.service.d/custom.conf

---------------
[Service]
TimeoutSec = 900

Everything works fine with MogoDB 5.0.14 with the same configuration.

yum update mongodb-org

-----------

=============================================================================================================================================================
 Package                                             Arch                      Version                          Repository                              Size
=============================================================================================================================================================
Updating:
 mongodb-org                                         x86_64                    5.0.15-1.el7                     mongodb-ansible-5.0                    6.1 k
 mongodb-org-database                                x86_64                    5.0.15-1.el7                     mongodb-ansible-5.0                    6.2 k
 mongodb-org-database-tools-extra                    x86_64                    5.0.15-1.el7                     mongodb-ansible-5.0                     11 k
 mongodb-org-mongos                                  x86_64                    5.0.15-1.el7                     mongodb-ansible-5.0                     20 M
 mongodb-org-server                                  x86_64                    5.0.15-1.el7                     mongodb-ansible-5.0                     28 M
 mongodb-org-shell                                   x86_64                    5.0.15-1.el7                     mongodb-ansible-5.0                     16 M
 mongodb-org-tools                                   x86_64                    5.0.15-1.el7                     mongodb-ansible-5.0                    6.1 k

Transaction Summary
=============================================================================================================================================================
Upgrade  7 Packages

 

The error messages from mongod.log

-------

{"t":\{"$date":"2023-02-24T16:04:05.100+07:00"}

,"s":"I",  "c":"STORAGE",  "id":22262,   "ctx":"initandlisten","msg":"Timestamp monitor starting"}

{"t":\{"$date":"2023-02-24T16:04:05.102+07:00"}

,"s":"I",  "c":"STORAGE",  "id":5071100, "ctx":"initandlisten","msg":"Clearing temp directory"}

{"t":\{"$date":"2023-02-24T16:04:05.105+07:00"}

,"s":"I",  "c":"CONTROL",  "id":20536,   "ctx":"initandlisten","msg":"Flow Control is enabled on this deployment"}

{"t":\{"$date":"2023-02-24T16:04:05.106+07:00"}

,"s":"I",  "c":"SHARDING", "id":20997,   "ctx":"initandlisten","msg":"Refreshed RWC defaults","attr":{"newDefaults":{}}}

{"t":\{"$date":"2023-02-24T16:04:05.106+07:00"}

,"s":"I",  "c":"FTDC",     "id":20625,   "ctx":"initandlisten","msg":"Initializing full-time diagnostic data capture","attr":{"dataDirectory":"/tiki/mongodb/data/diagnostic.data"}}

{"t":\{"$date":"2023-02-24T16:04:05.109+07:00"}

,"s":"I",  "c":"REPL",     "id":6015317, "ctx":"initandlisten","msg":"Setting new configuration state","attr":{"newState":"ConfigStartingUp","oldState":"ConfigPreStart"}}

{"t":\{"$date":"2023-02-24T16:04:05.109+07:00"}

,"s":"I",  "c":"-",        "id":4939300, "ctx":"monitoring-keys-for-HMAC","msg":"Failed to refresh key cache","attr":{"error":"ReadConcernMajorityNotAvailableYet: Read concern majority reads are currently not possible.","nextWakeupMillis":200}}

{"t":\{"$date":"2023-02-24T16:04:05.109+07:00"}

,"s":"I",  "c":"REPL",     "id":4280500, "ctx":"initandlisten","msg":"Attempting to create internal replication collections"}

{"t":\{"$date":"2023-02-24T16:04:05.111+07:00"}

,"s":"I",  "c":"REPL",     "id":4280501, "ctx":"initandlisten","msg":"Attempting to load local voted for document"}

{"t":\{"$date":"2023-02-24T16:04:05.111+07:00"}

,"s":"I",  "c":"REPL",     "id":21311,   "ctx":"initandlisten","msg":"Did not find local initialized voted for document at startup"}

{"t":\{"$date":"2023-02-24T16:04:05.111+07:00"}

,"s":"I",  "c":"REPL",     "id":4280502, "ctx":"initandlisten","msg":"Searching for local Rollback ID document"}

{"t":\{"$date":"2023-02-24T16:04:05.112+07:00"}

,"s":"I",  "c":"REPL",     "id":21529,   "ctx":"initandlisten","msg":"Initializing rollback ID","attr":{"rbid":1}}

{"t":\{"$date":"2023-02-24T16:04:05.112+07:00"}

,"s":"I",  "c":"REPL",     "id":21313,   "ctx":"initandlisten","msg":"Did not find local replica set configuration document at startup","attr":{"error":

{"code":47,"codeName":"NoMatchingDocument","errmsg":"Did not find replica set configuration document in local.system.replset"}

}}

{"t":\{"$date":"2023-02-24T16:04:05.112+07:00"}

,"s":"I",  "c":"REPL",     "id":6015317, "ctx":"initandlisten","msg":"Setting new configuration state","attr":{"newState":"ConfigUninitialized","oldState":"ConfigStartingUp"}}

{"t":\{"$date":"2023-02-24T16:04:05.112+07:00"}

,"s":"I",  "c":"CONTROL",  "id":20714,   "ctx":"LogicalSessionCacheRefresh","msg":"Failed to refresh session cache, will try again at the next refresh interval","attr":{"error":"NotYetInitialized: Replication has not yet been configured"}}

{"t":\{"$date":"2023-02-24T16:04:05.113+07:00"}

,"s":"I",  "c":"REPL",     "id":40440,   "ctx":"initandlisten","msg":"Starting the TopologyVersionObserver"}

{"t":\{"$date":"2023-02-24T16:04:05.113+07:00"}

,"s":"I",  "c":"CONTROL",  "id":20712,   "ctx":"LogicalSessionCacheReap","msg":"Sessions collection is not set up; waiting until next sessions reap interval","attr":{"error":"NamespaceNotFound: config.system.sessions does not exist"}}

{"t":\{"$date":"2023-02-24T16:04:05.113+07:00"}

,"s":"I",  "c":"REPL",     "id":40445,   "ctx":"TopologyVersionObserver","msg":"Started TopologyVersionObserver"}

{"t":\{"$date":"2023-02-24T16:04:05.113+07:00"}

,"s":"I",  "c":"NETWORK",  "id":23015,   "ctx":"listener","msg":"Listening on","attr":{"address":"/tmp/mongodb-27017.sock"}}

{"t":\{"$date":"2023-02-24T16:04:05.113+07:00"}

,"s":"I",  "c":"NETWORK",  "id":23015,   "ctx":"listener","msg":"Listening on","attr":{"address":"0.0.0.0"}}

{"t":\{"$date":"2023-02-24T16:04:05.113+07:00"}

,"s":"I",  "c":"NETWORK",  "id":23016,   "ctx":"listener","msg":"Waiting for connections","attr":{"port":27017,"ssl":"off"}}

{"t":\{"$date":"2023-02-24T16:04:05.115+07:00"}

,"s":"I",  "c":"CONTROL",  "id":23377,   "ctx":"SignalHandler","msg":"Received signal","attr":{"signal":15,"error":"Terminated"}}

{"t":\{"$date":"2023-02-24T16:04:05.115+07:00"}

,"s":"I",  "c":"CONTROL",  "id":23378,   "ctx":"SignalHandler","msg":"Signal was sent by kill(2)","attr":{"pid":1,"uid":0}}

{"t":\{"$date":"2023-02-24T16:04:05.115+07:00"}

,"s":"I",  "c":"CONTROL",  "id":23381,   "ctx":"SignalHandler","msg":"will terminate after current cmd ends"}

{"t":\{"$date":"2023-02-24T16:04:05.115+07:00"}

,"s":"I",  "c":"REPL",     "id":4784900, "ctx":"SignalHandler","msg":"Stepping down the ReplicationCoordinator for shutdown","attr":{"waitTimeMillis":15000}}

{"t":\{"$date":"2023-02-24T16:04:05.115+07:00"}

,"s":"I",  "c":"COMMAND",  "id":4784901, "ctx":"SignalHandler","msg":"Shutting down the MirrorMaestro"}

{"t":\{"$date":"2023-02-24T16:04:05.115+07:00"}

,"s":"I",  "c":"REPL",     "id":40441,   "ctx":"SignalHandler","msg":"Stopping TopologyVersionObserver"}

{"t":\{"$date":"2023-02-24T16:04:05.116+07:00"}

,"s":"I",  "c":"REPL",     "id":40447,   "ctx":"TopologyVersionObserver","msg":"Stopped TopologyVersionObserver"}

{"t":\{"$date":"2023-02-24T16:04:05.116+07:00"}

,"s":"I",  "c":"SHARDING", "id":4784902, "ctx":"SignalHandler","msg":"Shutting down the WaitForMajorityService"}

{"t":\{"$date":"2023-02-24T16:04:05.116+07:00"}

,"s":"I",  "c":"CONTROL",  "id":4784903, "ctx":"SignalHandler","msg":"Shutting down the LogicalSessionCache"}

{"t":\{"$date":"2023-02-24T16:04:05.116+07:00"}

,"s":"I",  "c":"NETWORK",  "id":20562,   "ctx":"SignalHandler","msg":"Shutdown: going to close listening sockets"}

{"t":\{"$date":"2023-02-24T16:04:05.117+07:00"}

,"s":"I",  "c":"NETWORK",  "id":23017,   "ctx":"listener","msg":"removing socket file","attr":{"path":"/tmp/mongodb-27017.sock"}}

{"t":\{"$date":"2023-02-24T16:04:05.118+07:00"}

,"s":"I",  "c":"NETWORK",  "id":4784905, "ctx":"SignalHandler","msg":"Shutting down the global connection pool"}

{"t":\{"$date":"2023-02-24T16:04:05.118+07:00"}

,"s":"I",  "c":"CONTROL",  "id":4784906, "ctx":"SignalHandler","msg":"Shutting down the FlowControlTicketholder"}

{"t":\{"$date":"2023-02-24T16:04:05.118+07:00"}

,"s":"I",  "c":"-",        "id":20520,   "ctx":"SignalHandler","msg":"Stopping further Flow Control ticket acquisitions."}

{"t":\{"$date":"2023-02-24T16:04:05.118+07:00"}

,"s":"I",  "c":"REPL",     "id":4784907, "ctx":"SignalHandler","msg":"Shutting down the replica set node executor"}

{"t":\{"$date":"2023-02-24T16:04:05.118+07:00"}

,"s":"I",  "c":"ASIO",     "id":22582,   "ctx":"ReplNodeDbWorkerNetwork","msg":"Killing all outstanding egress activity."}

{"t":\{"$date":"2023-02-24T16:04:05.118+07:00"}

,"s":"I",  "c":"CONTROL",  "id":4784908, "ctx":"SignalHandler","msg":"Shutting down the PeriodicThreadToAbortExpiredTransactions"}

{"t":\{"$date":"2023-02-24T16:04:05.118+07:00"}

,"s":"I",  "c":"REPL",     "id":4784909, "ctx":"SignalHandler","msg":"Shutting down the ReplicationCoordinator"}

{"t":\{"$date":"2023-02-24T16:04:05.118+07:00"}

,"s":"I",  "c":"REPL",     "id":5074000, "ctx":"SignalHandler","msg":"Shutting down the replica set aware services."}

{"t":\{"$date":"2023-02-24T16:04:05.118+07:00"}

,"s":"I",  "c":"REPL",     "id":5123006, "ctx":"SignalHandler","msg":"Shutting down PrimaryOnlyService","attr":{"service":"TenantMigrationDonorService","numInstances":0,"numOperationContexts":0}}

{"t":\{"$date":"2023-02-24T16:04:05.118+07:00"}

,"s":"I",  "c":"ASIO",     "id":22582,   "ctx":"TenantMigrationDonorServiceNetwork","msg":"Killing all outstanding egress activity."}

{"t":\{"$date":"2023-02-24T16:04:05.118+07:00"}

,"s":"I",  "c":"REPL",     "id":5123006, "ctx":"SignalHandler","msg":"Shutting down PrimaryOnlyService","attr":{"service":"TenantMigrationRecipientService","numInstances":0,"numOperationContexts":0}}