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Type: Bug
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Resolution: Cannot Reproduce
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Priority: Critical - P2
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None
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Affects Version/s: 2.4.0
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Component/s: API
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None
I met the same issue that were resolved in https://jira.mongodb.org/browse/SPARK-160
My versions are:
Spark: 2.4.1
Mongo: 4.0
Mongo Spark connector: org.mongodb.spark:mongo-spark-connector_2.11:2.4.0
>>> pyspark --version
Welcome to
____ __
/ _/ ___ _____/ /_
\ \/ _ \/ _ `/ __/ '/
/__/ ./_,// //_\ version 2.4.1
/_/
Using Scala version 2.11.12, OpenJDK 64-Bit Server VM, 1.8.0_151
Branch branch-2.4.1
Here is the code snippet:
df = spark.read.format("com.mongodb.spark.sql").options(uri="mongouri", database="db", collection="col").load() df.printSchema() # this works and can print intended results df.show(1) # when doing show, it prints out the following error
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/usr/lib/spark-current/python/pyspark/sql/dataframe.py", line 378, in show
print(self._jdf.showString(n, 20, vertical))
File "/usr/lib/spark-current/python/lib/py4j-0.10.7-src.zip/py4j/java_gateway.py", line 1257, in _call_
File "/usr/lib/spark-current/python/pyspark/sql/utils.py", line 63, in deco
return f(*a, **kw)
File "/usr/lib/spark-current/python/lib/py4j-0.10.7-src.zip/py4j/protocol.py", line 328, in get_return_value
py4j.protocol.Py4JJavaError: An error occurred while calling o184.showString.
: org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 2.0 failed 1 times, most recent failure: Lost task 0.0 in stage 2.0 (TID 2, localhost, executor driver): java.lang.NoClassDefFoundError: Could not initialize class com.mongodb.spark.sql.MapFunctions$isBsonNumber$
at com.mongodb.spark.sql.MapFunctions$.com$mongodb$spark$sql$MapFunctions$$convertToDataType(MapFunctions.scala:190)
at com.mongodb.spark.sql.MapFunctions$$anonfun$3.apply(MapFunctions.scala:39)
at com.mongodb.spark.sql.MapFunctions$$anonfun$3.apply(MapFunctions.scala:37)
at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:234)
at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:234)
at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33)
at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:186)
at scala.collection.TraversableLike$class.map(TraversableLike.scala:234)
at scala.collection.mutable.ArrayOps$ofRef.map(ArrayOps.scala:186)
at com.mongodb.spark.sql.MapFunctions$.documentToRow(MapFunctions.scala:37)
at com.mongodb.spark.sql.MongoRelation$$anonfun$buildScan$1.apply(MongoRelation.scala:58)
at com.mongodb.spark.sql.MongoRelation$$anonfun$buildScan$1.apply(MongoRelation.scala:58)
at scala.collection.Iterator$$anon$11.next(Iterator.scala:410)
at scala.collection.Iterator$$anon$11.next(Iterator.scala:410)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage1.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$13$$anon$1.hasNext(WholeStageCodegenExec.scala:636)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at org.apache.spark.shuffle.sort.BypassMergeSortShuffleWriter.write(BypassMergeSortShuffleWriter.java:125)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:99)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:55)
at org.apache.spark.scheduler.Task.run(Task.scala:121)
at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:403)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:409)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Driver stacktrace:
at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1893)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1881)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1880)
at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1880)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:926)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:926)
at scala.Option.foreach(Option.scala:257)
at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:926)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:2114)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2063)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:2052)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:49)
at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:737)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2061)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2082)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2101)
at org.apache.spark.sql.execution.SparkPlan.executeTake(SparkPlan.scala:407)
at org.apache.spark.sql.execution.CollectLimitExec.executeCollect(limit.scala:38)
at org.apache.spark.sql.Dataset.org$apache$spark$sql$Dataset$$collectFromPlan(Dataset.scala:3393)
at org.apache.spark.sql.Dataset$$anonfun$head$1.apply(Dataset.scala:2546)
at org.apache.spark.sql.Dataset$$anonfun$head$1.apply(Dataset.scala:2546)
at org.apache.spark.sql.Dataset$$anonfun$53.apply(Dataset.scala:3373)
at org.apache.spark.sql.execution.SQLExecution$$anonfun$withNewExecutionId$1.apply(SQLExecution.scala:79)
at org.apache.spark.sql.execution.SQLExecution$.withSQLConfPropagated(SQLExecution.scala:144)
at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:74)
at org.apache.spark.sql.Dataset.withAction(Dataset.scala:3367)
at org.apache.spark.sql.Dataset.head(Dataset.scala:2546)
at org.apache.spark.sql.Dataset.take(Dataset.scala:2760)
at org.apache.spark.sql.Dataset.getRows(Dataset.scala:256)
at org.apache.spark.sql.Dataset.showString(Dataset.scala:293)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244)
at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
at py4j.Gateway.invoke(Gateway.java:282)
at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
at py4j.commands.CallCommand.execute(CallCommand.java:79)
at py4j.GatewayConnection.run(GatewayConnection.java:238)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.NoClassDefFoundError: Could not initialize class com.mongodb.spark.sql.MapFunctions$isBsonNumber$
at com.mongodb.spark.sql.MapFunctions$.com$mongodb$spark$sql$MapFunctions$$convertToDataType(MapFunctions.scala:190)
at com.mongodb.spark.sql.MapFunctions$$anonfun$3.apply(MapFunctions.scala:39)
at com.mongodb.spark.sql.MapFunctions$$anonfun$3.apply(MapFunctions.scala:37)
at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:234)
at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:234)
at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33)
at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:186)
at scala.collection.TraversableLike$class.map(TraversableLike.scala:234)
at scala.collection.mutable.ArrayOps$ofRef.map(ArrayOps.scala:186)
at com.mongodb.spark.sql.MapFunctions$.documentToRow(MapFunctions.scala:37)
at com.mongodb.spark.sql.MongoRelation$$anonfun$buildScan$1.apply(MongoRelation.scala:58)
at com.mongodb.spark.sql.MongoRelation$$anonfun$buildScan$1.apply(MongoRelation.scala:58)
at scala.collection.Iterator$$anon$11.next(Iterator.scala:410)
at scala.collection.Iterator$$anon$11.next(Iterator.scala:410)
at org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIteratorForCodegenStage1.processNext(Unknown Source)
at org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$13$$anon$1.hasNext(WholeStageCodegenExec.scala:636)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:409)
at org.apache.spark.shuffle.sort.BypassMergeSortShuffleWriter.write(BypassMergeSortShuffleWriter.java:125)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:99)
at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:55)
at org.apache.spark.scheduler.Task.run(Task.scala:121)
at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:403)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:409)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
... 1 more